Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02144 ATGAGTTGGTCTGGAGGAGATTGGGTGTGTGGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGAGGGCCTGACCCTTCAACCTACATATACAACAGGACTGAAGCTTTGGCAGGGGATTGGTTTTGCAACTGTGGAGCTCACAACTATGCAAGTAGATCAAGCTGCTATAGGTGTGGTGCAATCAAAGATTATTGCTCTTCAGGATATGACACCAACTCTGGAGAATATGGATTTGATCCTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTATGCCCAAGAGTTGGATGTGGAGTGCATAATTATGCTAGCAGGGCAGAATGCTTCAAATGCAAAATGCCAAGGGAGTTTGACTGA 393 0.4656 MSWSGGDWVCGVCQHINFKKREACQSCGYPKYGGPDPSTYIYNRTEALAGDWFCNCGAHNYASRSSCYRCGAIKDYCSSGYDTNSGEYGFDPFPPGWKTGDWLCPRVGCGVHNYASRAECFKCKMPREFD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02144 130 SUPERFAMILY Ran binding protein zinc finger-like 48 75 IPR036443 -
Cca11g02144 130 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Cca11g02144 130 Gene3D - 43 75 - -
Cca11g02144 130 Gene3D - 1 35 - -
Cca11g02144 130 Gene3D - 95 128 - -
Cca11g02144 130 SUPERFAMILY Ran binding protein zinc finger-like 91 128 IPR036443 -
Cca11g02144 130 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Cca11g02144 130 SMART zf_4 50 73 IPR001876 -
Cca11g02144 130 SMART zf_4 100 126 IPR001876 -
Cca11g02144 130 SMART zf_4 6 30 IPR001876 -
Cca11g02144 130 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Cca11g02144 130 Pfam Zn-finger in Ran binding protein and others 49 72 IPR001876 -
Cca11g02144 130 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Cca11g02144 130 Pfam Zn-finger in Ran binding protein and others 98 127 IPR001876 -
Cca11g02144 130 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Cca11g02144 130 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 129 - -
Cca11g02144 130 PANTHER ZINC FINGER PROTEIN 1 129 - -
Cca11g02144 130 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02144 Cca-Chr11 47289241 47290280 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02144 - - pvu:PHAVU_003G162400g 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02144 11 47289241 47290280 Cca11g00173 11 2098191 2100332 ECH
Cca11g02144 11 47289241 47290280 Cca11g02144 11 47289241 47290280 ECH
Cca11g02144 11 47289241 47290280 Cca03g00757 03 16252971 16254165 PCT