Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02145 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGAGGGCCTGACCCTTCAACCTACAGATACAACAGAACTGAAGCTTTAGCAGGGGACTGGTTTTGCAACTGTGGAGGTCACAACTATGCCAGTAGATCAAGCTGCTATAGGTGTGGTGCAATGAAAGATGATTACTCTTCAGGATATGGCAACAATTCTGGAGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGTCCAAGACTTGGATGTGGAGTGCATAATTATGCTAGCAGGACAGAATGCTATAAATGCAAAATGCCAAAAGATTTTGGTGGTGCAGACTGA 402 0.4602 MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGGHNYASRSSCYRCGAMKDDYSSGYGNNSGGYGSDTFPPGWKTGDWLCPRLGCGVHNYASRTECYKCKMPKDFGGAD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02145 133 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Cca11g02145 133 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Cca11g02145 133 Pfam Zn-finger in Ran binding protein and others 98 127 IPR001876 -
Cca11g02145 133 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Cca11g02145 133 SUPERFAMILY Ran binding protein zinc finger-like 46 76 IPR036443 -
Cca11g02145 133 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Cca11g02145 133 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Cca11g02145 133 SUPERFAMILY Ran binding protein zinc finger-like 92 129 IPR036443 -
Cca11g02145 133 PANTHER ZINC FINGER PROTEIN 1 130 - -
Cca11g02145 133 SMART zf_4 50 73 IPR001876 -
Cca11g02145 133 SMART zf_4 100 126 IPR001876 -
Cca11g02145 133 SMART zf_4 6 30 IPR001876 -
Cca11g02145 133 Gene3D - 93 129 - -
Cca11g02145 133 Gene3D - 42 76 - -
Cca11g02145 133 Gene3D - 1 35 - -
Cca11g02145 133 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 130 - -
Cca11g02145 133 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02145 Cca-Chr11 47297103 47298606 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02145 - - gmx:100780120 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00757 03 16252971 16254165 Cca11g02145 11 47297103 47298606 PCT