Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03077 ATGGAGACTGTGCCAACCTCAACAGCCACCAACACTCCGAGCAGGTACGAGAACCAAAAGCGCCGAGACTGGAACACCTTCTGCCAGTACCTCACCAACCACCGCCCGCCGCTCTCCGTGGCGGCCTGCAGCGGCGCGCACGTGCTGGAGTTTCTCCACTACCTCGACCAATTCGGGAAGACGAAGGTGCACAGTCCCACGTGTCCCTTCTTCGGCCTCCCAAACCCTCCGGCGCCCTGCCCTTGCCCTCTCCGCCAGGCGTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGCGCCGCCTTCGAAGAGAACGGCGGCAGGCCGGAGACCAACCCCTTCGGCGCTCGCGCCGTTAGGCTTTACTTGCATGATGTTCGTGATTTTCAGGCCAAGGCCAGAGGAGTCAGCTACGAGAAGAAAAGAAAGAGGCCAAAGCAAAACATCGCTGCTTCCCCCAATGCCACTGCCACTGCCACTTAG 483 0.6232 METVPTSTATNTPSRYENQKRRDWNTFCQYLTNHRPPLSVAACSGAHVLEFLHYLDQFGKTKVHSPTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPETNPFGARAVRLYLHDVRDFQAKARGVSYEKKRKRPKQNIAASPNATATAT 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03077 160 Pfam ALOG domain 9 128 IPR006936 -
Cca03g03077 160 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 6 150 - -
Cca03g03077 160 ProSiteProfiles ALOG domain profile. 15 142 IPR006936 -
Cca03g03077 160 MobiDBLite consensus disorder prediction 136 160 - -
Cca03g03077 160 PANTHER PROTEIN G1-LIKE2 6 150 IPR040222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03077 Cca-Chr3 52204338 52205999 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03077 - - ccaj:109818208 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03077 03 52204338 52205999 Cca02g01004 02 26536547 26538350 PCT