Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03161 ATGATCTCCTCAAAAACCTCCACTTTTCTGTGCAACTCTGGTATAGGTGGGTGGTTTTCTTGTAGTAACGAGAGAAAGTGTTATTTGAGGGTGAAGTGTTCAGCTCCTAGTAAGAGATCAGGTGATAGACCAATCAGCATTGTAATGGAGACGAGTCATTCTTCCACGGTGGCTGATGTCGATGATAATCCGACCATTGGGGGCGGTGTTCGGGATGTTTATGGTGAGGATAGGGCCAGTGAGGATCAGTCTGTTACTCCTTGGAGTGTTTCTGTTGCTAGTGGATATACTTTGTTGAGAGATCCACATTTTAATAAAGGACTAGCCTTCACCGAGACAGAGAGAGATGCACACTACTTGCGTGGTCTTCTTCCTCCAACAGTCATTCCTCAAGAAACTCAGGTGAAAAAAATGATCCACAACATAAGACAGTATCAAGTTCCATTGCAGAAGTACATGGCCATGATGGATCTTCAGGAGAGAAATGAAAGGTTGTTTTACAAGCTTCTAGTTGATCATGTTGAGGAGTTACTCCCGGTTGTTTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGATCCATCTTCATGCATCCTCAGGGTCTTTATATAAGCTTGAAAGAGAAAGGAAGGATTCTTGAAGTACTTAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGACGGAGAGCGGATCTTAGGTCTTGGGGATCTTGGCTGTCAAgggatgggaataccagtcggaaaactttctttatacaccgcacttggtggagttcgcccttcttctTGTTTGCCTATTACAATTGATGTTGGTACAAACAATGAGAAGTTGTTGAACGACGAATTATACATAGGGCTCAAACATAAACGAGTAACTGGGCAGGAATACGCTGAACTTCTTGAAGAATTCATGACTGCAGCCAAGAAAAATTATGGAGAAAAACTCCTCATCCAGtttgaagactttgcaaaccacaatgcttttgctctacttgaaagatataggtcaacacatcttgtttttaatgatgatatCCAGGGAACTGCATCAGTTGTCCTTGCAGGACTAGTTGCGGCTCTGAATTTGGTTGGGGGAAACTTGTTCGATCATCGGTTCTTATTCCTTGGTGCTGGAGAGGCCGGCACTGGTATAGCAGAACTCATAGCACTTGAAATATCGAAACGGACAAATGCCCCTCTGGATGAAGTGCGCAAAAACATTTGGTTGGTGGATTCAAAGGGTTTGATTGTCAAATCTCGCAAAGAATCACTCCAACATTTTAAGAAGCCGTGGGCTCATGAACACGAACCTGTTAAGGAACTTTTAGATGCCGTTAATCAAATTAAGCCAACAGTGTTGATTGGAACATCAGGACAAGGGAAAACTTTTACACGAGAAGTGGTTGAGGCTATGGCCTCCAATAATGAGAAACCTATTATTCTTGCCCTTTCCAACCCGACATCTCAGTCAGAATGTACTGCTGAAGAAGCTTATACGTGGACCCAGGGACGTGCCATCTTTGCTAGCGGTAGCCCATTTGCCCCAGTTGAATACGATGGAAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATTTTTCCGGGATTTGGTCTCGGTTTAATAATGTCTGGTACCATCCGAGTGCATGACGACCTGCTTCTGGCAGCTTCTGAGGCTTTGGCTTCACAAGTGACCCAGGAGGACTATAACAGGGGACTCATATTCCCACCATTCACCAACATCAGAAAGATTTCAGCACACATAGCTGCCAAAGTGGCTTCGAAGGCATATGAGCTTGGATTGGCGACGCGCCTTCCTCAACCGAAAGATTTGGTGCTGTATGCTGAGAGCTGTATGTATACTCCAACTTACAGAAACTACCGGTGA 1905 0.41 MISSKTSTFLCNSGIGGWFSCSNERKCYLRVKCSAPSKRSGDRPISIVMETSHSSTVADVDDNPTIGGGVRDVYGEDRASEDQSVTPWSVSVASGYTLLRDPHFNKGLAFTETERDAHYLRGLLPPTVIPQETQVKKMIHNIRQYQVPLQKYMAMMDLQERNERLFYKLLVDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHKRVTGQEYAELLEEFMTAAKKNYGEKLLIQFEDFANHNAFALLERYRSTHLVFNDDIQGTASVVLAGLVAALNLVGGNLFDHRFLFLGAGEAGTGIAELIALEISKRTNAPLDEVRKNIWLVDSKGLIVKSRKESLQHFKKPWAHEHEPVKELLDAVNQIKPTVLIGTSGQGKTFTREVVEAMASNNEKPIILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDYNRGLIFPPFTNIRKISAHIAAKVASKAYELGLATRLPQPKDLVLYAESCMYTPTYRNYR 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03161 634 PANTHER MALIC ENZYME-RELATED 64 634 - -
Car07g03161 634 SMART Malic_M_2 350 603 IPR012302 GO:0051287
Car07g03161 634 PRINTS Malic enzyme signature 165 189 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 PRINTS Malic enzyme signature 225 254 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 PRINTS Malic enzyme signature 261 283 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 PRINTS Malic enzyme signature 321 339 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 PRINTS Malic enzyme signature 346 362 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 PRINTS Malic enzyme signature 377 393 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 PRINTS Malic enzyme signature 480 496 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 Pfam Malic enzyme, NAD binding domain 350 603 IPR012302 GO:0051287
Car07g03161 634 SMART malic_2 159 340 IPR012301 GO:0004471
Car07g03161 634 CDD NAD_bind_1_malic_enz 350 628 - -
Car07g03161 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 350 633 IPR036291 -
Car07g03161 634 Pfam Malic enzyme, N-terminal domain 159 340 IPR012301 GO:0004471
Car07g03161 634 ProSitePatterns Malic enzymes signature. 346 362 IPR015884 GO:0004471
Car07g03161 634 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 64 634 - -
Car07g03161 634 PIRSF ME 68 634 IPR001891 GO:0004470|GO:0004471
Car07g03161 634 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Car07g03161 634 Gene3D - 348 634 - -
Car07g03161 634 Gene3D - 93 347 IPR037062 GO:0004471
Car07g03161 634 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 78 349 IPR046346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03161 Car-Chr7 58858468 58863993 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03161 K00029 - gmx:100791514 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03161 07 58858468 58863993 Car01g02751 01 52883655 52889511 ECH
Car06g00333 06 3557703 3563071 Car07g03161 07 58858468 58863993 ECH
Car07g03161 07 58858468 58863993 Car07g03161 07 58858468 58863993 ECH
Car07g03161 07 58858468 58863993 Car05g03123 05 76019977 76025425 ECH
Car01g02751 01 52883655 52889511 Car07g03161 07 58858468 58863993 PCT