Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03123 ATGAGTAACATGAACAGTATCGGTGGTGGTGTTAAAGACCTCTATGGTGAGGATAGTGCTACAGAGGATCAACTTATCACACCTTGGTCTTTCTCTGTTGCTAGTGGATGTAGTTTGCTAAGAGATCCACGGTACAACAAAGGGCTTGCCTTCACTGAGAATGAAAGAGATGCTCATTATGTGCGTGGCCTTTTGCCTCCAGCTGTTTTCTCTCAAGAGCTTCAGGAAAAGAGGTTGATGCAAAATCTTCGTCAGTATGAGGTTCCTCTTCATAAGTACATAGCCTTGATGGATCTTCAGGAGAGGAATGAAAGATTGTTTTACAAGGTTCTGATCAATAATGTTGAGGAACTTCTTCCTGTTGTTTACACTCCAACAGTTGGAGAAGCCTGCCAAAAATATGGAAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAAGAAAAAGGCAAGATTCTTGAGGTGCTTAAAAATTGGCCAGAAAAGACTATTCAAGTTATTGTTGTAACTGACGGTGAGCGTATTTTGGGACTAGGAGATCTTGGTTGCCAGggaatgggaattcctgttggaaaactttctctctatactgcattaggaggtgttcggccttcatcgTGCTTGCCTATAACAATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTACATTGGCCTTAAACAGAAGAGAGCAACTGGGAAGGAATATGCTGAACTTGTAGAGGAGTTTATGTATGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTAGTACAGTTTGAAGATTTCGCCAACCATAATGCATTTGATCTTCTGGACAAATACAGCTCATCTCATCTTGTTTTTAATGATGATATACAGGGTACAGCATCTGTTGTATTAGCAGGATTGCTTGCTTCCCTTAAATTAGTTGGAGGAACCTTAGCTGATCACACATTCTTATTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTTGAAGAGACCCGCAAGAAGATCTGGCTTGTGGACTCCAAGGGTCTTATTGTTAGATCTCGTATGCAATCCCTTCAACACTTCAAAAAGCCTTGGGCACATGAGCATGAACCTGTGAAGGAGCTTCTAGGAGCTGTCAAGGCAATCAAACCAACCGTGTTGATTGGATCATCAGGAGTAGGAAAGACATTTACCAAGGATGTAGTTGAAGCCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCACTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATTTTTGCTAGTGGAAGCCCATTTGATCCTATTGAATATGAAGGAAAAGTTTTTGTTCCTGGACAGGTTTTAATACGCTTACTAATTAATCTTCTTTTCTTTTTAGGCTGA 1464 0.3934 MSNMNSIGGGVKDLYGEDSATEDQLITPWSFSVASGCSLLRDPRYNKGLAFTENERDAHYVRGLLPPAVFSQELQEKRLMQNLRQYEVPLHKYIALMDLQERNERLFYKVLINNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLKQKRATGKEYAELVEEFMYAVKQNYGEKVLVQFEDFANHNAFDLLDKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVRSRMQSLQHFKKPWAHEHEPVKELLGAVKAIKPTVLIGSSGVGKTFTKDVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPIEYEGKVFVPGQVLIRLLINLLFFLG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03123 487 Gene3D - 289 485 - -
Car05g03123 487 SMART malic_2 100 281 IPR012301 GO:0004471
Car05g03123 487 Gene3D - 34 288 IPR037062 GO:0004471
Car05g03123 487 ProSitePatterns Malic enzymes signature. 287 303 IPR015884 GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 262 280 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 318 334 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 421 437 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 166 195 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 287 303 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 106 130 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 PRINTS Malic enzyme signature 202 224 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 18 290 IPR046346 -
Car05g03123 487 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 291 474 IPR036291 -
Car05g03123 487 PANTHER MALIC ENZYME-RELATED 5 474 - -
Car05g03123 487 Pfam Malic enzyme, N-terminal domain 100 280 IPR012301 GO:0004471
Car05g03123 487 SMART Malic_M_2 291 485 IPR012302 GO:0051287
Car05g03123 487 PANTHER MALIC ENZYME 5 474 - -
Car05g03123 487 PIRSF ME 11 476 IPR001891 GO:0004470|GO:0004471
Car05g03123 487 Pfam Malic enzyme, NAD binding domain 291 473 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03123 Car-Chr5 76019977 76025425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03123 K00029 - gmx:100818219 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03123 05 76019977 76025425 Car05g03123 05 76019977 76025425 ECH
Car06g00333 06 3557703 3563071 Car05g03123 05 76019977 76025425 ECH
Car07g03161 07 58858468 58863993 Car05g03123 05 76019977 76025425 ECH
Car01g02751 01 52883655 52889511 Car05g03123 05 76019977 76025425 ECH