Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01817 ATGACCGTGATGATGTCTGCTCCCATTGACCAGCAAGAGGATGAGGAGGTGCTCGTGCCTCACGCTGATTTGCCAGATAACAATCATCAGCCAATGGAAGTTGTAGCTCAACCTGAAGCTGCCAATACTGTGGAGAGCCAGCCTGTCAGTGATCCTCCACAATCCAGATTCACATGGAGAATTGACAACTTTACTAGGCTGAATACAAAGAAGCTCTATTCAGAAGTATTCGTTGTTGGTAGTTATAAATGGCGTGTCCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTCGCAGATTCAGCTAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAATTGTTAATCAAATCCATAGTAAATATTCCGTCAGAAAAGACACACAACATCAATTTAATGCACGGGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTCGTGAATGATACTCTTATAATTGAAGCCGAGGTTCTTGTTCGTAAGATTGTTGACTATTGGAATTATGACTCAAAGAAGGAGACCGGCTATGTTGGGCTTAAGAACCAAGGAGCTACATGTTATATGAATTCTCTACTCCAAACTCTGTACCATATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCAACAACTGAGAATGATATGCCCTCTGGAAGCATCCCTTTGGCTCTACAAAGTTTATTCTACAAGCTCCAATACAGTGACACCAGCGTTGCAACAAAGGAGCTGACAAAATCTTTTGGATGGGATACATACGATTCTTTCATGCAACATGATGTTCAAGAGCTAAATAGGGTCCTCTGTGAAAAACTTGAAGATAAAATGAAGGGAACCGTTGTTGAGGGAACTATACAAAAGTTGTTCGAAGGACATCATATGAACTACATAGAGTGCATCAATGTGGACTACAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTCAAAGGTTGTCGCGATGTATATGCTTCCTTTGATAAGTATGTTGAAGTTGAACGTCTTGAGGGGGATAACAAATATCATGCCGAACAGTATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTTATTGATTTTCCTCCTGTCCTTCAGCTTCAACTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTTAAGATTAATGACCGTTATGAGTTTCCTTTACAACTTGATCTTGATCGTGAGAATGGAAAATATCTATCACCTGATGCTGATAGGAGTGTCCGCAATCTTTATACGCTTCACAGTGTTTTGGTTCACAGTGGGGGCGTGCACGGTGGGCATTATTATGCTTTTATCAGGCCAACTCTCTCTGAACAGTGGTACAAATTTGACGACGAGAGGGTGACGAAAGAAGACAATAAGCGAGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCCCAGACAAATCCTGGATTCAATAATACACCGTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAAGTGACAAGGACAAAATCATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCCGAGGCCCATCTTTATACAATTATAAAGGTGGCAAGAGATGAAGATATTGAAGTGCAGATGGGAAAAGATATCTACTTTGATCTTGTAGACCACGACAAAGTGAGGAGTTTTCGTGTACAAAAGCAGACTCCTTTTAACGTTTTCAAGGAAGAGGTTGCAAAAGAGTTTGGCGTACCAGTTCAATTTCAGCGCTTTTGGCTATGGGCTAAGCGGCAAAACCATACTTATCGACCTAATAGACCGTTGACACATGCTGAGGAAGCACAAACTGTCGGGCAATTGAGAGAAGTGTCAAACAAGGTTCACAATGCAGAACTGAAGTTGTTTTTGGAGGTGGAGAAGGGGATGGATTTATGTCCCATTGCACCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGCTATATGATCCTGAAAAAGAAGAGCTTCGTTATGTCGGAAGGCTCTTTGTGAAGTGTACTGGCAAGCCATCAGAAATCATAACAAGGCTAAATGAAATGGCTGGTTATGATCCTGAAGAAGATATTGCACTTTATGAGGAGATTAAGTTTGAACCAAATGTTATGTGTGAACCTATTGATAAGAAAGTAACATTTCGAGCAAGCCAGCTGGAGGATGGAGATATTGTATGCTTTCAGAAAGCTCTGGCTATCGATAGCGAGGAACAAGTCCGCTATCCAGATGTTCCCTCATATTTAGAATATGTTCACAATCGCCAGGTAGTCCATTTTCGATCTCTGGACAGACCCAAGGAGGATGACTTTTCCTTGGAGATGTCAAGGCTTTATACATACGATGATGTGGTGGAGAGAGTTGCTCAACAACTTGGCCTGGATGATCCATCCAAAATACGTCTTACCCCTCACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATTAAGTACCGAGGCGTCGATCATTTGTCTGATATGCTAGTTCATTACAATCAGACGTCAGATATATTATACTATGAAGTGCTTGACATCCCGCTACCCGAATTACAAGGCTTGAAAACTCTGAAAGTTGCATTTCATCATGCCATCAAGGACGAGgtggttagtcacaccatcagactcccaaagcagagcactgttggagatgtccttgatgatctTAAAACAAAGGTGGAGCTATCTCATACTGATGCCGAACTAAGGTTGCTTGAAGTCTTCTATCACAAGATTTACAAGGTGTTCCCATCCAATGAAAAGATTGAAAACATTAATGATCAATACTGGACATTGCGAGCAGAGGAGATTCCAGAAGAAGAGAAAAACATTGGTCAACAGGATCGATTAATTCACGTATACCATTTTACTAAAGACACTGCTCAAAATCAAATGCAAATTCAAAACTTTGGGGATCCTTTTTTCTTGGTTATACATGAGGGTGAAGCTCTATCTGAAATTAAAGTTCGAATACAGAAGAAACTTCAAGTTCCTGATGAAGAGTTTAGCAAGTGGAAGTTTGCTTTTCTATCACTCGGGCGTCCTGAGTACCTTCAGGATTCGGACATTGTATCCAGTCGATTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCGGTAAACCAGAATCGTCACACATATGAGAAGCCAGTAAAGATTTATAATTAG 3357 0.3971 MTVMMSAPIDQQEDEEVLVPHADLPDNNHQPMEVVAQPEAANTVESQPVSDPPQSRFTWRIDNFTRLNTKKLYSEVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAIVNQIHSKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIIEAEVLVRKIVDYWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDIEVQMGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHAEEAQTVGQLREVSNKVHNAELKLFLEVEKGMDLCPIAPPDKTKDDILLFFKLYDPEKEELRYVGRLFVKCTGKPSEIITRLNEMAGYDPEEDIALYEEIKFEPNVMCEPIDKKVTFRASQLEDGDIVCFQKALAIDSEEQVRYPDVPSYLEYVHNRQVVHFRSLDRPKEDDFSLEMSRLYTYDDVVERVAQQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHAIKDEVVSHTIRLPKQSTVGDVLDDLKTKVELSHTDAELRLLEVFYHKIYKVFPSNEKIENINDQYWTLRAEEIPEEEKNIGQQDRLIHVYHFTKDTAQNQMQIQNFGDPFFLVIHEGEALSEIKVRIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTYEKPVKIYN 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01817 1118 CDD MATH 56 179 IPR002083 GO:0005515
Car05g01817 1118 SUPERFAMILY Cysteine proteinases 194 551 IPR038765 -
Car05g01817 1118 ProSiteProfiles MATH/TRAF domain profile. 54 179 IPR002083 GO:0005515
Car05g01817 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 439 456 IPR018200 GO:0004843|GO:0006511
Car05g01817 1118 SMART math_3 56 160 IPR002083 GO:0005515
Car05g01817 1118 Gene3D Cysteine proteinases 196 524 - -
Car05g01817 1118 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 624 876 IPR024729 -
Car05g01817 1118 Pfam Ubiquitin carboxyl-terminal hydrolase 199 520 IPR001394 GO:0004843|GO:0016579
Car05g01817 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 1043 - -
Car05g01817 1118 Gene3D - 684 801 - -
Car05g01817 1118 SUPERFAMILY TRAF domain-like 52 187 - -
Car05g01817 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Car05g01817 1118 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 52 195 IPR008974 GO:0005515
Car05g01817 1118 CDD peptidase_C19C 197 525 - -
Car05g01817 1118 Pfam MATH domain 61 180 IPR002083 GO:0005515
Car05g01817 1118 Coils Coil 532 563 - -
Car05g01817 1118 Pfam Ubiquitin-specific protease C-terminal 886 1096 IPR029346 -
Car05g01817 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1043 - -
Car05g01817 1118 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 523 IPR028889 -
Car05g01817 1118 Gene3D - 802 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01817 Car-Chr5 63330757 63347062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01817 199 478 Miscellaneous Gene Families AT2G24640 25.081 6.35e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01817 K11838 - gmx:100781560 2123.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01817 05 63330757 63347062 Car05g01817 05 63330757 63347062 ECH
Car03g02709 03 72751815 72753390 Car05g01817 05 63330757 63347062 ECH
Car04g02117 04 27599559 27601789 Car05g01817 05 63330757 63347062 ECH
Car02g01834 02 48551347 48572222 Car05g01817 05 63330757 63347062 PCT