Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01834 ATGACCGTCATGACTCCTGCTCCCATTGACCAGCAGGAGGATGAGGAGATGCTTGTACCGAACAGGGTGCCGGCACCGACGGATTTGGTTGAGAATAATAATCATCAACCTATGGATGTTGTTACTCAACCTGAAACTGCCAACACCGTGGATAGTCAGCCTGTCGAGGATCCTTCACCATCAAGATTCACTTGGAGAATTGACAACTTTTCTAGGATGAATACGAAAAAGCTCTATTCAGAAGTATTTGTTGTTGGGAGTTACAAATGGCGTGTACTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCTATGTATTTGGACGTTGCAGATTCAACTAGTTTGCCGTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTAGTTAATCAAATCCATAATAAGTACTCTGTGAGAAAAGATACGCAGCATCAGTTCAATGCACGAGAAAGTGATTGGGGTTTCACGTCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTATGAATGACACTCTTATAATTGAGGCCGAGGTCCTTGTCCGTAGGATTGTTGATTACTGGACTTACGATTCAAAAAAGGAGACTGGCTATGTTGGGCTTAAGAACCAGGGAGCTACATGTTATATGAATTCTCTGCTCCAAACTCTGTACCATATTCCTTATTTCCGAAAGGCTGTATACCATATGCCTACAACAGAGAATGACATTCCCTCTGGAAGCATCCCCTTGGCTTTGCAAAGTTTGTTCTACAAGCTTCAGTATAGTGACACCAGTGTCGCAACAAAAGAGCTGACAAAATCTTTTGGATGGGATACATATGATTCATTCTTGCAGCATGATGTTCAAGAACTAAATAGAGTCCTTTGTGAAAAACTTGAAGACAAAATGAAGGAAACTGTTGTTGAGGGAACTATACAGAAACTATTTGAAGGGCACCATATGAACTATATCGAGTGCATCAATGTGGACTATAAATCAACTCGAAAGGAGTCATTTTATGATCTTCAACTTGATGTCAAAGGCTGTCCTGATGTTTATGCTTCTTTTGACAAGTATGTTGAAGTTGAGCGTCTTGAGGGTGACAACAAATATCATGCTGAACAGTATGGTTTGCAGGATGCTAAGAAGGGTGTCTTGTTCATTGATTTTCCCCCTGTTTTGCAACTTCAGCTGAAAAGATTCGAATATGACTTTATGCGTGATACTATGGTAAAGATTAATGACCGTTATGAGTTTCCATTGCAACTTGATCTTGATCGCTACAATGGAAAATATTTATCACCTGATGCTGACAGGAATGTGCGCAATCTTTACACACTTCATAGCGTTCTGGTTCACAGTGGTGGTGTGCATGGTGGACATTACTATGCTTTTATCAGGCCGACTCTCTCTGATCAGTGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGACCCTAAACGGGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCGCAGACAAATCCTGGATTCAATAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGACACTGACAAGGAAAAAATAATATGCAATGTGGATGAGAAAGACATTGCAGAGCATTTAAGGGAGAGGTTGAAGAAAGAACAGGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCAGAGGCTCACCTCTACACTATTATAAAGGTGGCACGAGATGAAGACCTTGAAGAACAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGCGGAGTTTCCGTGTCCAAAAGCAGACGCCATTTAACGTTTTCAAGGAAGAGGTTGCTAAAGAGTTTGGTGTACCGGTTCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGTCAAAACCATACATATCGTCCTAATCGGCCATTGACACAAATTGAGGAAGCACAATCTGTTGGACAATTGAGAGAGATATCGAACAAGGTTCACAATGCAGAATTAAAATTGTTTTTGGAAGTGGAGCGTGGGCCGGATATATTTCCCATTGCACCACCTGAGAAGACAAAGGATGATATATTACTTTTTTTCAAGTTATACGATCCTGAAAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAGCAGTACTGGTAAGCCATCAGAAATCATAGCAAGGTTAAATAAAATGGCTCGTTATGATCCTGATGAAGAGATTGGACTTTATGAGGAAATTAAGTTTGAACCAAATGTAATGTGTGAGCCTATTGACAAGAAATTAACATTTCGAGGAAGCCAGCTTGAAGATGGAGATATTATATGCTTTCAGAAAGCTCCTGCTATGGACATTGAGGAACATATCCGCTATCCTGATGTGCCTTCTTACTTGGAATATGTGCACAATCGCCAGGTTGTTCACTTTCGATCTCTAGATAAACCAAAGGAAGATGACTTTTGCTTGGAGATGTCAAGGCTTTTTACATATGATGATGTTGTGGAGAGAGTAGCTCAAAAACTTGGTTTGGACGACCCATCCAAAATCAGGCTCACCCCACACAACTGCTACTCTCAACAACCGAAACCTCAGCCTATTAAGTACCGAGGGCTGGAACATTTATCTGATATGCTGGTTCACTACAATCAGACATCGGATATATTGTACTACGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTTTGAAAACTCTGAAAGTTGCATTTCATCATGCTACGAAGGATGAAGTAGTTATCCATACCATCAGACTCCCAAAGCAGAGCACTGTGGGAGATGTACTTGATGATCTTAAAACAAAGGTTGAGTTGTCTCGTCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCACAAGATATACAAGGTTTTCCCTCCCAATGAGAAGATTGAAAACATAAATGATCAATACTGGACATTACGAGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTCGGTCCTCATGATCGTTTAATCCACGTGTATCATTTTACTAAAGACACAACTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCCTTCTTCTTGGTCATACATGAATGTGAGTGTTTGGATGAAATTAAAGTGCGCATACAGAAGAAACTTCAAGTTCCTGATGACGAGTTTCCCAAGTGGAAGTTTGCCTTTTTTTCATTAGGGCGTCCTGAGTACCTCGAGGACTCAGACATTGTATCTAGTCGTTTTCAGAGAAGAGAAGTATATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGCTAATCAGAATCGTCACACATTTGAGAAGCCAGTTAAGATTTATAATTAG 3375 0.4041 MTVMTPAPIDQQEDEEMLVPNRVPAPTDLVENNNHQPMDVVTQPETANTVDSQPVEDPSPSRFTWRIDNFSRMNTKKLYSEVFVVGSYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLIIEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDIPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKETVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRYNGKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRDTDKEKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLEEQIGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTQIEEAQSVGQLREISNKVHNAELKLFLEVERGPDIFPIAPPEKTKDDILLFFKLYDPEKEELRYVGRLFVSSTGKPSEIIARLNKMARYDPDEEIGLYEEIKFEPNVMCEPIDKKLTFRGSQLEDGDIICFQKAPAMDIEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLFTYDDVVERVAQKLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGLEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSRPDAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTTQNQMQIQNFGEPFFLVIHECECLDEIKVRIQKKLQVPDDEFPKWKFAFFSLGRPEYLEDSDIVSSRFQRREVYGAWEQYLGLEHTDNAPKRSYAANQNRHTFEKPVKIYN 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01834 1124 Gene3D - 690 807 - -
Car02g01834 1124 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1049 - -
Car02g01834 1124 Coils Coil 538 569 - -
Car02g01834 1124 Gene3D Cysteine proteinases 202 530 - -
Car02g01834 1124 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 1049 - -
Car02g01834 1124 CDD peptidase_C19C 203 528 - -
Car02g01834 1124 Gene3D - 808 905 - -
Car02g01834 1124 Pfam Ubiquitin-specific protease C-terminal 892 1102 IPR029346 -
Car02g01834 1124 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 630 882 IPR024729 -
Car02g01834 1124 MobiDBLite consensus disorder prediction 486 508 - -
Car02g01834 1124 CDD MATH 62 185 IPR002083 GO:0005515
Car02g01834 1124 ProSiteProfiles MATH/TRAF domain profile. 60 185 IPR002083 GO:0005515
Car02g01834 1124 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 445 462 IPR018200 GO:0004843|GO:0006511
Car02g01834 1124 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 201 IPR008974 GO:0005515
Car02g01834 1124 Pfam MATH domain 67 186 IPR002083 GO:0005515
Car02g01834 1124 SMART math_3 62 166 IPR002083 GO:0005515
Car02g01834 1124 SUPERFAMILY TRAF domain-like 60 190 - -
Car02g01834 1124 Pfam Ubiquitin carboxyl-terminal hydrolase 205 526 IPR001394 GO:0004843|GO:0016579
Car02g01834 1124 SUPERFAMILY Cysteine proteinases 200 557 IPR038765 -
Car02g01834 1124 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 206 221 IPR018200 GO:0004843|GO:0006511
Car02g01834 1124 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 205 529 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01834 Car-Chr2 48551347 48572222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01834 191 482 Miscellaneous Gene Families AT4G31670 24.688 4.42e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01834 K11838 - gmx:100800328 2111.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01834 02 48551347 48572222 Car05g01817 05 63330757 63347062 PCT