Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02117 ATGGACTCTAGTAATGTTTTTGAGATATTCACATGGAGAATTGAAAATTTCTCAAACAAAAATGTCATGAAATTAACTTCAAAGGCTTTCGAAATCCGCAATTATACATGGAAGATACGTGTGCATCCAATGAGGAGGGATGTGGACCATTTTTCAATATATTTGGAGGTTGCTGATTCTTTACCACCTTATGGATGGAGTAGAAACACCTTTTTCAAGTTGGTTCTAATTAATCAGTTGAATAGGAACAAATCCATTGTAAAAGAGACAGAACAAAAGTTCAATGGAGGATTTCGTAGCTGGGGTTCATTTTTCTTAAAACTGAACGATTTCCTTGACCATAAACACGGTTATCTTATGAGAAACACATGCATCATTGAAGCTCATATTTGTGTCTCAAACTTTGCACCAAGAATTCATCACATAAATTCAACTTCAACCAATGATTCTAATTCCTCAGATGAGAGGGAAACCCTTAGTCCTAGAACATCAGGTTCTAGTTCTAATCCAACAGAAGAAGGAGAAATTCAAACTTCACATTTAACACTAAAACAAGTTTTTAATTTTCAAACTTTAAGCCAAGAAGAAAAAGCTTTTGTTCCACTTTTGGAAGAAGTTTGCACATGGCATCCTTCTTTGATACAGAGACAAATGAAAAGAACTCGTCAGCTTCGACAATTGTCATTCACATCATTAGGAAAAGTTTTACATTTTCTCAAGACAAAGAAAGTGAAAGATATGAGTGAAGATGATATCAAGAATCTTAAGAGTTTGTGGGAGAAACTTGTCAACTCATCAGAATTTGAGTTGGATTGGTTAGAGCCTTATGTTCAATCTGTTTTAGGTGTGAAGGATTATTTGGAAAGGGCTAAAAAGTTGAAGAAATTAAAGGATAGTGTTGTTGCTTTGGAGATTAAAATGAAGAAGCTTAGAGTAGAATTGGCTGCTTCAGAAACAGAGTTTGAGGTTGCAAGAAGAGGTTTATCAGAAGTAAGAAATGGTTTTCAAGAAATGAATGTTAATGCTCCAATAGGTTATGCTATGTTTTAG 1050 0.3429 MDSSNVFEIFTWRIENFSNKNVMKLTSKAFEIRNYTWKIRVHPMRRDVDHFSIYLEVADSLPPYGWSRNTFFKLVLINQLNRNKSIVKETEQKFNGGFRSWGSFFLKLNDFLDHKHGYLMRNTCIIEAHICVSNFAPRIHHINSTSTNDSNSSDERETLSPRTSGSSSNPTEEGEIQTSHLTLKQVFNFQTLSQEEKAFVPLLEEVCTWHPSLIQRQMKRTRQLRQLSFTSLGKVLHFLKTKKVKDMSEDDIKNLKSLWEKLVNSSEFELDWLEPYVQSVLGVKDYLERAKKLKKLKDSVVALEIKMKKLRVELAASETEFEVARRGLSEVRNGFQEMNVNAPIGYAMF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02117 349 ProSiteProfiles MATH/TRAF domain profile. 7 130 IPR002083 GO:0005515
Car04g02117 349 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 1 331 - -
Car04g02117 349 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 1 331 - -
Car04g02117 349 SUPERFAMILY TRAF domain-like 10 133 - -
Car04g02117 349 CDD MATH 10 130 IPR002083 GO:0005515
Car04g02117 349 Coils Coil 293 320 - -
Car04g02117 349 SMART math_3 9 111 IPR002083 GO:0005515
Car04g02117 349 MobiDBLite consensus disorder prediction 143 175 - -
Car04g02117 349 Pfam MATH domain 14 130 IPR002083 GO:0005515
Car04g02117 349 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 8 150 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02117 Car-Chr4 27599559 27601789 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02117 - - gmx:100797919 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02117 04 27599559 27601789 Car04g02117 04 27599559 27601789 ECH
Car04g02117 04 27599559 27601789 Car05g01817 05 63330757 63347062 ECH
Car04g02117 04 27599559 27601789 Car03g02708 03 72748385 72750901 PCT