Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01475 ATGCCAACGCCAGTAGGAGTGGCGAGACAATGCTTAACACCAGAAGCAGGACAATCGCTAGACGAAGCAGTCTCCGTAGCAAAACGACGCGGACACGCACAAACGACGTCGCTTCACGCCGTTTCAGCACTATTATCACTACCTTCATCTTCAATTCTACGCGACGCCTGTTGTCGTGCGAGAAACTCGGCGTATTCACCACGGTTACAGTTCAAAGCACTTGACCTTTGTCTTTCTGTTTCACTAGACAGAGCACCTTCTTCGCACAACAACCTTTCCTCCGATCATGAACCGCCTGTTTCTAATTCTCTTATGGCTGCGATTAAACGCTCTCAGGCTAACCAACGCCGTCATCCTGATAACTTTCATTTTTATCATCAACAGCAACACCAGCTTCAGAGCCAGCAAACGTTTTCCGTTTCCACTGTTAAAGTTGAGTTACAGCATTTGATTCTTTCTATTCTTGATGACCCGGTTGTTAGTCGGGTTTTCGCTGAAGCGGGTTTTCGGAGCTCCGAAATTAAACTCGCTATACTCCGTCCTCTCCCGCATCTTTTTCGATCTAGAGGTCCGCCTATTTTTCTCTGTAATCTCCCGGACCAGCCTCGCCGGggatccggattcgggtttggctccgggtttccgtttcttaatggattcggggattcggatGAGAATTTCCGGCGAATTGGAGAGATTCTTGTTCGGAGTAAAGGGAGGAACCCTCTGCTTCTCGGTGCATGTGCTAACGATGTGCTGATAAGTTTTGTAGAGGCTGTGGAGAAACGGAGGGAGGGGGTTTTACCTATGGAGCTCGCGGGGTTGCGTGTGGTTTGCATTAGGAAGGAATTGGAGAGTGGTGATGGTAAGGTTTTGGGTTTGAGGTTGAGGGAGATTGGTGTTATGGCGGAGGAGTGTGTGGGACCAGGTGTAGTTGTGAGTTTTGGGGATTTGAAGGGTTTTTTGAATGAGGATGGGTTTGGAGAAGGTGTTATGGAATTGGCTAAATTGTTGAAGGTTCATTGTGATAAGTTTTGGTTGGTGGGTTCTGCTGATAGTTATGAGAGTTACTTGAAATTTCTGGGTAGGTTTTCTTCCGTGGAGAAAGATTGGGATTTGCAGATTCTTCCTATCACTTCTGTTAAGCCTTTTGAATCATATCATCAGAGACCTAAGTCCAGCTTAATGGATTCATTTGTACCATTTGGAGGCTTTTTTTCATCGCAGTCTGATTTGAAAGGTCCACAAAATGGCTCATTTTGTTGTGTTCCTCAGTGTCAACAATGCGGTGAAAAGTGTGAACATGAACTCCTTGCTGCTTCAAAGGAAAGATTTTCCATTTCAGCTCCCGATCCATACCCATCTAACTTACCTCAATGGTTGAAGACTACTGAATTTGGCAAAGCAAAAGCATTGGATGTTAAGACCAAAGATGATGGTGTTTTGCTGGATAGTAGCAAATCTGTGACGCTGCGGAATAACTCAGACAACATATGCCAACTTCTGCATCAGCGTACCACCGACGCAAATACTTGTCAAACTGTTGTGGGGTTTCATTGTACTGACAACAAAAATGATTGCGCTGACAAATCACCTAGTGAATACATCAATCTCAACTCTCGCATACCTATTGGCGTTCAAACGATATCTCCATCACAATCCAACAGTCCTTTTCCTGCTCTCTTCACGGCGAAGCAGGAGAAAAATACTCCAAAACTAACAGAGATGTTCCAGAAAGTAAAAGATCTCGAGTCAGATCTAGGCTTGGGAATATGCTCCTCTCCCACCAGCAATAAACTGAAGAAACCTGAAGTTCAATATACAATGGAGCCTCCAAAGGAAACCCGTAATCAATTTTCTTCAAGCTTTAATTTGGATGAAGGGAATATCAGGAAGCATCCGTCACAATCTTCATCCTGCTTAAGTTTTGACTATTGTGGACAAGTTGATGCAAGAAATCCTAAAATTCTTTTTGAAGCTCTCTCCAAGGAGGTAAGCTGGCAAGATGAAGCCTTAAGGGCTATTATCAAAACAATATTCTGTGGTCCAACAAAACGGGTTAATGACCATGGAGCAAACCAGAGGGGGGACAAATGGATGAATTTTGTTGGACCTGATAGGCATGGTAAAAAGAAAATTGCTGTTTCTCTAGCCGAGTTACTGTATGGAAGCCGAGAAAAATTTACTTCTGTGGATCTAAGTTCCGAAGAAATGAATGGATGTGTGAAATTCAGAGGGAAGACTAACCTTGATTTTATTGTAGATGAGTGCTGCAAGAAACCATTGTCAGTTGTTTTCATTGAAAATGTTGACAGAGCGGATATAGTAGCTCAAAGTAGTTTGTCTCAGGCCATGAAGACAGGAAAAATTGCAGACTCGCATGGACGAGAAGTTAGTGTAAATAATGCTATATTTGTGTTTTCTTTCTCAGGTTACCAAAATAGTTTGATGCAAACAAGGGAACCTTCCTACTATTCTGAGGAAAGAATACTGAGAGCAAAGGGGGGAGGTATCAAGATAGAAGTTGAATATGCGGTTAGAGACATCAGAAGCCAAAGCATCATAGCTAACAATTCAATAGATGTCATTCCTAATCTAATTTTCATCAACAAACGAAAATTGATTTGTGACAATGAACTTTATGATCACCATTTACTCTCAGATACGGTTAAAAGGGCACATACAATGTCGAATCGGCTGTTAGATTTGAATCTTCCAGCTGAAGAAAATGAACAGAAACAAACCGAAGATGGAAACTCCGACCATTTCTCAAATAGAGTGTTGAAATTGGTCAGAAGTAACTTCAAAAAAATTATTGGATCTGAATGTGCCTTACAAATCCAAACAGAAGTCATGGACCAATTGCTTGCAGCCGCATATGTTGCAGACAGGGATATGGATGTGGAGAACTGGGTTGAGCAAGTTCTCTGTGGAGGATTCAATGAAGTGCAGAGTAGATACAACCTCACTGGTAGTTCTATTGTGAAACTAGCCACATGTTCAGAGCAAGCTGCAAGTGTACACCTTCCACCAAGAATAATCTTAGACTGA 3051 0.4163 MPTPVGVARQCLTPEAGQSLDEAVSVAKRRGHAQTTSLHAVSALLSLPSSSILRDACCRARNSAYSPRLQFKALDLCLSVSLDRAPSSHNNLSSDHEPPVSNSLMAAIKRSQANQRRHPDNFHFYHQQQHQLQSQQTFSVSTVKVELQHLILSILDDPVVSRVFAEAGFRSSEIKLAILRPLPHLFRSRGPPIFLCNLPDQPRRGSGFGFGSGFPFLNGFGDSDENFRRIGEILVRSKGRNPLLLGACANDVLISFVEAVEKRREGVLPMELAGLRVVCIRKELESGDGKVLGLRLREIGVMAEECVGPGVVVSFGDLKGFLNEDGFGEGVMELAKLLKVHCDKFWLVGSADSYESYLKFLGRFSSVEKDWDLQILPITSVKPFESYHQRPKSSLMDSFVPFGGFFSSQSDLKGPQNGSFCCVPQCQQCGEKCEHELLAASKERFSISAPDPYPSNLPQWLKTTEFGKAKALDVKTKDDGVLLDSSKSVTLRNNSDNICQLLHQRTTDANTCQTVVGFHCTDNKNDCADKSPSEYINLNSRIPIGVQTISPSQSNSPFPALFTAKQEKNTPKLTEMFQKVKDLESDLGLGICSSPTSNKLKKPEVQYTMEPPKETRNQFSSSFNLDEGNIRKHPSQSSSCLSFDYCGQVDARNPKILFEALSKEVSWQDEALRAIIKTIFCGPTKRVNDHGANQRGDKWMNFVGPDRHGKKKIAVSLAELLYGSREKFTSVDLSSEEMNGCVKFRGKTNLDFIVDECCKKPLSVVFIENVDRADIVAQSSLSQAMKTGKIADSHGREVSVNNAIFVFSFSGYQNSLMQTREPSYYSEERILRAKGGGIKIEVEYAVRDIRSQSIIANNSIDVIPNLIFINKRKLICDNELYDHHLLSDTVKRAHTMSNRLLDLNLPAEENEQKQTEDGNSDHFSNRVLKLVRSNFKKIIGSECALQIQTEVMDQLLAAAYVADRDMDVENWVEQVLCGGFNEVQSRYNLTGSSIVKLATCSEQAASVHLPPRIILD 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01475 1016 Gene3D - 10 180 IPR036628 -
Car05g01475 1016 Pfam Clp amino terminal domain, pathogenicity island component 145 179 IPR004176 -
Car05g01475 1016 Gene3D - 635 851 IPR027417 -
Car05g01475 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 811 IPR027417 -
Car05g01475 1016 PANTHER PROTEIN SMAX1-LIKE 8 1 1015 - -
Car05g01475 1016 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1015 - -
Car05g01475 1016 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01475 Car-Chr5 59028943 59033182 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01475 - - gmx:100800606 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02065 04 26273665 26277694 Car05g01475 05 59028943 59033182 ECH
Car05g01272 05 56300083 56306602 Car05g01475 05 59028943 59033182 ECH
Car02g01340 02 39492874 39498599 Car05g01475 05 59028943 59033182 ECH
Car05g01475 05 59028943 59033182 Car05g01475 05 59028943 59033182 ECH