Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02065 ATGAGAACAGGAAACTGTTCTTTGCAACAAGGCCTAACTGTAGAGGCTGCAAACATAGTAAAGCAAGCAATAACCCTCGCGAAGCGTCGCGGCCATGCTCAAGTAACACCCCTCCATGTAGCAAACACTATGCTTAGTGTTACTAATGGTTTATTCAGAACAGCTTGTCTTCAATCTCATTCTCACCCTCTTCAATGTAAGGCTTTAGAGCTTTGTTTCAACGTTGCATTGAATCGCTTGCCCGCGACAACTTCTAGCCCTATGTTGAGTTCTCATCATTCTCAGcagtctcagtctcagtatccttctatctcaAATGCTTTAGTTGCCGCTTTTAAGCGCGCTCAAGCTCATCAACGCCGTGGATCGATCGAGAATCAACAACAACCACTTTTGACGGTGAAGATCGAGCTTGAACAACTAATTATTTCAATTTTGGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCAAGATTTAATAGTACTCAAGTCAAAAGCAATGTTGAACAAGCTATTTCTTTGGAAATATGCTCAAACAATAACAATCCTTCTTCATTGAGTGGAAATTCAAATGAAAACAATAATCTAACTCCTTCTCCTTCTCAAGGTGGAGAGAAAGTTTCAAACAAATCATTGGTAGTATTGGATCCAATTAGGGTTGAGGATATCAATAGTGTTGTGGATAACTTGAAAATGAATCAAAGAAAAAGTATTGTGGTTGTTGGAGAGTGTGTGTCTAATCTTGAAGGTGTAGTAAAAGGAGTGATGGATAAATTTGATAAAGGGGATATTGTTGACGAGTCTCTTAAAGGTGTCAAGTTTATTTCTCTTTCTCTTTCTAATTTTATCAATGTTTCAAGGGTAGAAGTTGAGCAAAAAGTTGAAGAACTTAAGGGACATGCAAAAAAGAGTTATCATGGAAAAGGGTATGTTTTGTATCTTGGAGATCTTAAATGGTTGTTTGATTATAGAAAGCAACAAGGGATTAGAGGTTATTATTGTCCAATAGAACACATGGTAATTGAGATTGGAAAAATTGTTAATGGTTTTGGACAAAGTAGTGGAAGGTTTTGGTTGATGTGTATTGCTACTTTTCAAGGTTACATGAGATGTAAAAATGGACAACCATCACTTGAAACTATTTGGAATCTTCATCCTATCACTATCCCCGCTGGAAGTTTGCGTCTCAGTCTCATCATTCACAGTGGAGCAGATAAAAATGTGTGCAGAAAAGAGAAAGCTGACAATAGAACTAGTTGGCTATTACATGAAGGAGTTGGAGATGATGAGATTGAAAAGGAAGAATCAGGTTGTTTTATGGAACCTTCAACAAAAATTGAGAACGAAGTTAGAAGTTTGCAAAGCAGTGGTTGTAATAGTGATTCATCAACTTCATGTCTTCCTGCATGGCTACAACAATACAAAAATGAAAATAAAGGAATCAACAATCATCAGAAGTGTGTCCAAGTGGGAGAGGTTTGCAAAAAGTGGAACTCAATGTATGGTTCAATCCAAAATCAACCCTATCAATATTGTGACAAAACCCTCACATTATCTTCACTATCACCTTCTTCATCCAATTCAGGTTTCTCATATGAGCAACAACAACACTCACAAAGTGATCACTATTTTTGGATCTCCAAAAGTGGAAGCAAATCCAATGAACCTTCTTTGCAAACCTACATTCCAGAGAGTAATAACACTAACCCTAATTCAACATCTTCTAGTGACCTTATGGAAATGGAGCACATAAGCATGTTCAAAGAACTCAACTTAGAGAACATGAAAACCCTAACCAATGCTTTGGAGAAAAAGGTTCCATGGCAAAAAGATATCATACCGGAAATCGCGAGCATGGTCTTGCAATGTAGGTCAGGTTTGGTAAAAAGAAAAGGGAAAGTGAGAAACATTGATGATGTTAAAGAAGAAACATGGTTGTTTTTTCAAGGTGTTGATATAGAAGGTAAAGAGAAAATAGCTAAAGAATTGGCTAGGGTTATTTTTGGATCCTACAATAATTTCATTTCAATATCATTGAGTAGTTTTTCTTCAACAAGAGCTGATTCAAGTGAGGAAAGTAGAAACAAAAGATCAAGAGATGAAACAAGTTGTAGTTACATTGAAAGATTTGGTGATGCAATCTCAAGCAACCCTCATAGGGTTTTTCTAATTGAAGATATTGAACAAGTTGATTATTTTTCACAACTTGGTTTCAAAAGGGCTATTGAGAAAGGAAGTGTTGTTAATTCAAATGGTGAAGAAGTTGGTTTTTTTGATGCTATTATTATTCTAAGTTGTGAAAGTTTTAGTTCAAGATCAAGAGCTTGTTCTCCTAAACAAAGATCCTCTCATGAAGAAAATGATGATGATTTTAATGTTGCTACTTTGGAAGAGACAAGTTCTTATGTTTCTTTGGATTTGAATATTTCTATTGATGATGATTACAGTGAGGATGATGATAGGTCGGTTGATGAGATTGGTCTACTAGAATCCGTAGACAGAAAGATTCTCTTCAAAATTCAGGAATTGTGA 2535 0.3562 MRTGNCSLQQGLTVEAANIVKQAITLAKRRGHAQVTPLHVANTMLSVTNGLFRTACLQSHSHPLQCKALELCFNVALNRLPATTSSPMLSSHHSQQSQSQYPSISNALVAAFKRAQAHQRRGSIENQQQPLLTVKIELEQLIISILDDPSVSRVMREARFNSTQVKSNVEQAISLEICSNNNNPSSLSGNSNENNNLTPSPSQGGEKVSNKSLVVLDPIRVEDINSVVDNLKMNQRKSIVVVGECVSNLEGVVKGVMDKFDKGDIVDESLKGVKFISLSLSNFINVSRVEVEQKVEELKGHAKKSYHGKGYVLYLGDLKWLFDYRKQQGIRGYYCPIEHMVIEIGKIVNGFGQSSGRFWLMCIATFQGYMRCKNGQPSLETIWNLHPITIPAGSLRLSLIIHSGADKNVCRKEKADNRTSWLLHEGVGDDEIEKEESGCFMEPSTKIENEVRSLQSSGCNSDSSTSCLPAWLQQYKNENKGINNHQKCVQVGEVCKKWNSMYGSIQNQPYQYCDKTLTLSSLSPSSSNSGFSYEQQQHSQSDHYFWISKSGSKSNEPSLQTYIPESNNTNPNSTSSSDLMEMEHISMFKELNLENMKTLTNALEKKVPWQKDIIPEIASMVLQCRSGLVKRKGKVRNIDDVKEETWLFFQGVDIEGKEKIAKELARVIFGSYNNFISISLSSFSSTRADSSEESRNKRSRDETSCSYIERFGDAISSNPHRVFLIEDIEQVDYFSQLGFKRAIEKGSVVNSNGEEVGFFDAIIILSCESFSSRSRACSPKQRSSHEENDDDFNVATLEETSSYVSLDLNISIDDDYSEDDDRSVDEIGLLESVDRKILFKIQEL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02065 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 769 IPR027417 -
Car04g02065 844 Gene3D - 216 391 IPR027417 -
Car04g02065 844 Pfam Clp amino terminal domain, pathogenicity island component 25 52 IPR004176 -
Car04g02065 844 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Car04g02065 844 MobiDBLite consensus disorder prediction 184 209 - -
Car04g02065 844 MobiDBLite consensus disorder prediction 556 577 - -
Car04g02065 844 Gene3D - 575 811 IPR027417 -
Car04g02065 844 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 843 - -
Car04g02065 844 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Car04g02065 844 PANTHER PROTEIN SMAX1-LIKE 3 1 843 - -
Car04g02065 844 SUPERFAMILY Double Clp-N motif 12 168 IPR036628 -
Car04g02065 844 Gene3D - 9 174 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02065 Car-Chr4 26273665 26277694 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02065 - - mtr:MTR_1g057150 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02065 04 26273665 26277694 Car05g01475 05 59028943 59033182 ECH
Car04g02065 04 26273665 26277694 Car04g02065 04 26273665 26277694 ECH
Car04g02065 04 26273665 26277694 Car05g01272 05 56300083 56306602 ECH
Car04g02065 04 26273665 26277694 Car02g01340 02 39492874 39498599 ECH