Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01340 ATGCCGACGCCGGTTAACACAGCGAGGCAATTTCTAACCGAAGAAGCGGCGCGTGCACTAGACGACGCAGTAACAGTAGCACGCCGTCGCAGCCACGCGCAAACAACATCACTCCACGCCGTCTCAGCCTTACTATCGTTACCGTCTTCCTCCCTCCGCGACGCATGCTGCCGTGCTCGAACCAGCGTTCGATTAACCTCACAGCCATCATTCTCGCAACGCCTTCAGTTCCGAGCGTTAGAGCTTTCCGTCGGCGTATCTCTCGACCGATTACCGTCTTCAAAAGCATCGACTGCGACGGAGGAGCCGCCGATTTCAAATTCTCTCATGGCCGCAATCAAACGGTCGCAAGCAAATCAACGCCGTCATCCGGAAAGCTTCCATCTCTTCAATCAGCAACAAGGAACTACGTCGTCTTTGTTGAAAGTTGAAATCAAACACTTCGTTTTATCGATTCTTGATGATCCAATCGTGAATCGCGTTTTCACTGAAGCCGGTTTTCGAAGTTGTGATGTTAAACTCGCTTTGCTTCAACCACCGGTTCAATCCTCTTCCCGGTTTTTTTCTTCTCGAACTATTTCCCCGCCGGTTTTTCTTTGTAACCTTGAACCGGGTCGAACCGGTTTAACTTTCCCTTTAGGGGGGATAGATGAGACTTCAAGAAGAATCGCTGAGGTTATTATGGTAAAAGAAAACGATAGAAAGAGAAACCCTTTGTTGTTGGGTGTTTATGCAAAAAGTGCTTTTAAGAGTTTCATTGAGTTGTTACAAAAGGGTAAAGGTGGTGCTTTGTTTCCTCCTGGTATGGCTGGGTTAAGTATTGTTTGTGTTGATAAAGAGATTATTGAGTTTGTGAAACATGGTGGGAGTGAAGAGAAGATGGGTTTGAGGTTTAAGGAATTAGGTTGTGAGGTGGAGAAGTGTTTGGGTCCTGGTGTTGTTGTTGGGTTTGGGGAGATTGAGGTTTTTGTTGGGGATTGTGTGAATGATGGTACTGTAAAGTTTGTTGTGTCGGAGTTGACTAGATTGTTGGAGGTTTATGGCGGGAAGGTTTGGTTGATGGGTGTGGCTGAAACTTCTGATGCTTATTCTAAGTTTTTGAGTTTGTTTCCATCTGTGGAAAATGATTGGGATTTGCATTTGCTTACTGTGACATCTGCTACTTCTTCAATGGAAGGACTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCCTTTGGTGGATTCTTTTCTACACCTTCTGAAAGCAAAAATCCCATAAGCTCTTCAAATGTATCTTTTACTCGTTGCGATAAATGCAATAAAAAGTATGAAGAAGAAGTTGCCGATGTTTTGAAGGTAGATCCTGCTACTCTAGCATCTAGTTTGTGTTCAACAAGCTTGCCTTGGTTGAAAAAGGTTGCTGATGTGGATACACATGGAGGACTGGATGTGGCAAAGACTAATGAAGAAAGTACAAGCTTGAATGAAAAGATATTGGGATTTCAAAAGAAATGGAATGATATTTGTCAACATCTTCATCAAACAAGGTCTCAAGTTCCATCGCTTGAGGTTTTACGGTATGGTTCAAGTTTTAAGGAAAGCAGCAGTAAAGATCCATCACTTAATGAACTCCAATGTTCCAGTCCATTTTCCTTCATGCCTAAAGAGTTGCATGGTACTTTTCCATCAAAACAGCTATCACCTATTCCACTACATACTGATACAGTCAGTGTCAATGTCAGAACTGATCATGTGCCGAAAGTTTTAGAGACTGAGCAAATTGACGGGGAGACTCCTTCGGTTGCCTCTTCACGTATGGCCAATATGAATGTGCTTGATCATAAATCATCTTCATCCCTAACTCCGGTCACCACAGATTTAGGATTGGGAACTTTGTATACATCAACATCAATTCCTTGCAAGCCCGTTAGCCCAAAATTTCAAGCTAGATCTTCCTGCTCTTTTTCAAACTTGGCAGAAAAAATGGATTCAGTGGATTTTAAGTCTCTTAATAAACTTCTCTTTGAAAAGGTAGGCTGGCAGGATCAGGTCATATTTGATATCAACCGAACTTTGTTCCTTCATAAATCTGGTGAAGGAAAGAGTAGAGACTCGCATGGTAGAGCAGACATATGGTTTGCTTTCCTCGGACCAGATAGAATTGGAAAAAGGAAAATTGCTTCGGCTCTTGCAGAGACTATATTTGGAAATTCAGAAAGAATAATCTCTGTGGACCTAGGCTTCCACGATATGTTTTACCCATCAAACTCGGTTTTTGAATGCCAAAAATCAGTTTGTTATGATGTGTTTATGAGGAAGACAGTGGTGGACTATATTGCAGGGGAGTTGAGTAAAAATCCCCATTCTGTCATCTTTCTTGAGAACGTAGAGAAAGCTGATTTTCTGGTGCAGAGTAGTTTATTGCAGGCAATAAAAAGAGGTAGATTTCCAGACTCACATGGAAGGGAAATTAGCATCAACAATGCAATATTTCTTTTAACCTCGACAATCTGTAAAAGCAACAGCTCTTCTGCTTTGGAAGAGGATAAATTGTTTTCTGAAGAAACAATTCTCAAAGCCAAAAGATGTCAATTGCAATTATTACTCGGGGATTCATCAGAGGATGCCAAAAGGAGTTGCAGTACAAATGTCAAGATTGTGCCAATAAAAGGGTTTTCCGAATCATCATTTCCAAATAAAAGAAAGCAGGCTGATACTAGTGACTTCAAAGAGGGAACAACAAGCAGTAAGATGCAAAAACAGGTATCCAAGAAATCAATGTGCTGTCTGGATTTAAATATGCCTCTAGAAGAGGGCGAAGAGGGTACAGACGACAACGATCATGAACACGAGAATGTAGCAGAAAAATCAGACTCCTGGTTTAGTGATTTTTTCAATCAAATGGACGAAAAAGTTGTTTTCAAGCCATTCAATTTTGACGTGCTCGCTGAACAATTGATAAAAAACATTAGCAAAACATTTCAAAGGACATTCGGTTCAGAGTTTCAGTTAGAAATTGATTACGAGGCAATGGCACAGATACTTGCAGCTTCTTGGTTAGCAGACAAGAAAAATGCAGTGGAAAATTGGGTTGAAAATGTTATTGGCAAAGGCTTCGTTGAGGCTAAGCAGAAATACCACCCTGCAACTAAATATGTCATGAAACTAGTTAACTGCGAATCGTTTTTTGTGGAAGAACCAGCTCTTGGAGTATGCCTTCCAGCTAGCATTAACATAGAGTAA 3228 0.4142 MPTPVNTARQFLTEEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSSSLRDACCRARTSVRLTSQPSFSQRLQFRALELSVGVSLDRLPSSKASTATEEPPISNSLMAAIKRSQANQRRHPESFHLFNQQQGTTSSLLKVEIKHFVLSILDDPIVNRVFTEAGFRSCDVKLALLQPPVQSSSRFFSSRTISPPVFLCNLEPGRTGLTFPLGGIDETSRRIAEVIMVKENDRKRNPLLLGVYAKSAFKSFIELLQKGKGGALFPPGMAGLSIVCVDKEIIEFVKHGGSEEKMGLRFKELGCEVEKCLGPGVVVGFGEIEVFVGDCVNDGTVKFVVSELTRLLEVYGGKVWLMGVAETSDAYSKFLSLFPSVENDWDLHLLTVTSATSSMEGLYSKSSLMGSFVPFGGFFSTPSESKNPISSSNVSFTRCDKCNKKYEEEVADVLKVDPATLASSLCSTSLPWLKKVADVDTHGGLDVAKTNEESTSLNEKILGFQKKWNDICQHLHQTRSQVPSLEVLRYGSSFKESSSKDPSLNELQCSSPFSFMPKELHGTFPSKQLSPIPLHTDTVSVNVRTDHVPKVLETEQIDGETPSVASSRMANMNVLDHKSSSSLTPVTTDLGLGTLYTSTSIPCKPVSPKFQARSSCSFSNLAEKMDSVDFKSLNKLLFEKVGWQDQVIFDINRTLFLHKSGEGKSRDSHGRADIWFAFLGPDRIGKRKIASALAETIFGNSERIISVDLGFHDMFYPSNSVFECQKSVCYDVFMRKTVVDYIAGELSKNPHSVIFLENVEKADFLVQSSLLQAIKRGRFPDSHGREISINNAIFLLTSTICKSNSSSALEEDKLFSEETILKAKRCQLQLLLGDSSEDAKRSCSTNVKIVPIKGFSESSFPNKRKQADTSDFKEGTTSSKMQKQVSKKSMCCLDLNMPLEEGEEGTDDNDHEHENVAEKSDSWFSDFFNQMDEKVVFKPFNFDVLAEQLIKNISKTFQRTFGSEFQLEIDYEAMAQILAASWLADKKNAVENWVENVIGKGFVEAKQKYHPATKYVMKLVNCESFFVEEPALGVCLPASINIE 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01340 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 1013 IPR027417 -
Car02g01340 1075 MobiDBLite consensus disorder prediction 891 911 - -
Car02g01340 1075 Gene3D - 10 179 IPR036628 -
Car02g01340 1075 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 726 IPR001270 GO:0005524
Car02g01340 1075 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 787 805 IPR001270 GO:0005524
Car02g01340 1075 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 820 834 IPR001270 GO:0005524
Car02g01340 1075 Pfam AAA domain (Cdc48 subfamily) 707 844 IPR003959 GO:0005524|GO:0016887
Car02g01340 1075 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 648 1074 - -
Car02g01340 1075 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 642 - -
Car02g01340 1075 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 648 1074 - -
Car02g01340 1075 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 642 - -
Car02g01340 1075 Gene3D - 638 971 IPR027417 -
Car02g01340 1075 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01340 Car-Chr2 39492874 39498599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01340 - - gmx:100804458 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01340 02 39492874 39498599 Car02g01340 02 39492874 39498599 ECH
Car02g01340 02 39492874 39498599 Car05g01475 05 59028943 59033182 ECH
Car05g01272 05 56300083 56306602 Car02g01340 02 39492874 39498599 ECH
Car04g02065 04 26273665 26277694 Car02g01340 02 39492874 39498599 ECH
Car05g01272 05 56300083 56306602 Car02g01340 02 39492874 39498599 PCT