Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01272 ATGCCAACGCCGGTAAGCACAGCGAGGCAATGTTTAACAGACGAAGCAGCGCGTGCACTAGACGACGCAGTATCAGTAGCGCGTAGGCGAAGCCACGCGCAAACAACATCCCTTCACGCCATCTCAGCTTTACTCTCACTCCCATCCAACGCGCTTCGCGACGCGTGCGCGCGTGTCGGAACATCTCCATACTCGCCGCGTCTCCAGTTCCGCGCCTTAGAACTCTCCGTCGGCGTCTCCCTCGACCGCCTCCCAACCACAAAATCCAGCGCCGCCGTCGTCAACGACGGCGTCGGACCTCCGGTGTCGAACTCTCTAATGGCGGCAATAAAACGTTCTCAGGCGAATCAACGTCGTCATCCAGATAGCTTTCATTTACTCCAAATAATGcaacaacaacaacaacaGAATCAAACGGCGTCGTTTTTGAAAGTTGAATTGAAACACTTCATTCTTTCGATTCTCGATGACCCTATAGTAAGTCGCGTTTTCGCTGAAGCGGGTTTTCGAAGCTACGATATTAAATTCGCTTTACTTCAACCTCCACCACCTTCTAGATTCTTCCATCGTTCTAATCCTCCGGTTTTTCTTATCGAACCCGACCCGGTTCGGTTCGACGAGAATTCCAGAAGGATTGTTGAGGTTATTGTTAGGAAGAGTAAAAGGAATCCTCTTTTGATGGGGGTTTATGCTAAAACAGCTCTTAAAAGGTTTATAGAGTTTTTTCAAAGTGGAAAGTTTGGTTTTTTACCTATGGAGCTTGATGGGTTGAGTGTTGTTTCTATTGAGAAGGAGATTTTTGAGTTTCTTGTTGGAGGTGAGAGTGAGGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCGTTTAATTGACCAATGTTTGGGTTCTGGTGTTGTTGTTAGCTTCGGGGAGATTGAGGTTTTTatgaagaatgatggtgatggtgatggtgatgatgGTCTTGGGTTTGTTGTTTCGAAGTTGACGAGGTTGTTGGAGGTTTATGGTGGTAAGGTTTGGTTGATAGGGGTAGCAGGAACTTCTGATGTTTATTCAAAGTTTCTAAGGTTGTTCCCTACAATTGATAAGGATTGGGATTTGCATCTTCTGACTGTGACCTCTGCTACTACATCTTCTATGGAAGGACTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCCACACCTTCTGATTTCAGAAATCCCATAAATTGTACAAATTCATCTTTAGTAGCTCTTTGTGACACATGCAATGAAAAGTATGAACAAGAAGTTGCTGATAATGTGAAGGTAGGGCCTTCTACTTCTTCACCAACAAGCTTGCCTTGGTTACAAAAGGTGAATGTAGAATCAGATAAAGTATTAATGGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATACTACGATCTTTGGATTACAAAGAAAATGGAGTGATATCTGTCAACATCTTCATCAAAACAAATCATTACCTGAAATCAATGTTTCCCAAACATTAACAAGGTTTCAAGCTCCATTCCATGAAGGGTTTCAATTTGGTAGAGGAACTTGCAATAAAGCTCTATCCCTTGATGAAATCCATCGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAACTTCATTTTCATCCAAACATATATTACCAGTTTCATCATTACCTTTTGATACTACTCTTAGTGTCAATGATAAAACTGAACATGTAGCAAAAGTTGCAAAATGTGATCAGAAATCATCTTCATCGCTTACTCCTGTTACCACAGATTTGGTTTTGGGAACTACATATGCATCGGCTACTCGTGATGAGCCAGATACTCCAAAACTAAGTGATCACAAGAAGCATCTTCACCACTTATCAGATTCTCTTTCAACTGACTTTGATGCTGTGAATGAGAATACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCTTGTCCGAATTTAGAAGGCAAATTTGAAACAGTCGATTTCAAGTCACTTTACAAACTTCTGACTGAAAAGGTTTGGTGGCAAGATGAGGCAATATATTCTATCATTAGAACTATGACACTTTGTAAATCCAGTGCTGGAAAGCGTAGCGGATCGAATGTTAGAGCAGACACATGGTTTTCGTTTCTTGGACTGGATAGAGTTGGAAAAAGAAAAATTGCTTCAGCACTAGCAGAAACTCTATTTGGAAGCAAACAAAGCTTAATCTCAGTGGATTTAAACTCTCGGGATAGGTTTCAGCCATTGGACTCAATTTTCGAATGCCACGACGTGCTTAGGAGGAAGACAGTTGTGGATTACATCGCTGGCGAGTTGAGTAAAAAACCGCATTCGGTTGTCTTTCTTGAAAATATAGATAAAGCTGATTTACTTGTGCAGAATAGTTTGTTCCAATCAATAAAAACAGGTAAATTTCCATACTCACATGGAAGGGAAATCAGCATCAACAATGTAATCTTTGTTGTAACCTCTTCTGTGTTCAAAGATTGCGGCTTTTTTGAAGTAGAAAAAGAAACTAAAATGTTTCCTGAGGAAAGAATCCTTGAAGCGAAAAGATGTCAAATGCAATTATCACTTGGACATGCTTCTGAGGATGCAAAGAGAAGCAGTAGCAGAAATGTGAGTGTTGCAATGAGAAAAGGGACATTGAAACATTCATTTCTGAATAAAAGAAAGCTAGTTGAAAGTGGTGATTCCAATGAGAAAGTAACTTGCAAGACACCGAAACATGTCGTAGAGGCATCAAGGTCCTATCTTGATCTAAATATGCCTCTAGAGGAAGTTGAGGACACTGATTATGATGACTGTGAAAAAGAATCTGTAGTTCAAAATCATGAAGCCTGGTTAAATGATTTCATTGAACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGACTTTCTTGCTGAGCAAGTAATAGAATGCATCGACAAACAATTTCAACGAACATTTGGGTCGGAATTTCAGCTGGAAATTGATTATGAGGTGATGTCACAGATACTTGCTGCTGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATAGAACATGTTCTTGGAAATAGTTTTGCTGAGGCACAAAAGAAGTACCACCATGCAAATGAGTATGTTATGAAACTTGTTAAATGTGAAAACATTTTTGTTGAAGAGCAAGCTCTAGAAGTATGTCTTCCAGCTAGAATTAATTTGAACTGA 3225 0.396 MPTPVSTARQCLTDEAARALDDAVSVARRRSHAQTTSLHAISALLSLPSNALRDACARVGTSPYSPRLQFRALELSVGVSLDRLPTTKSSAAVVNDGVGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKFALLQPPPPSRFFHRSNPPVFLIEPDPVRFDENSRRIVEVIVRKSKRNPLLMGVYAKTALKRFIEFFQSGKFGFLPMELDGLSVVSIEKEIFEFLVGGESEEKMGLRFDEVGRLIDQCLGSGVVVSFGEIEVFMKNDGDGDGDDGLGFVVSKLTRLLEVYGGKVWLIGVAGTSDVYSKFLRLFPTIDKDWDLHLLTVTSATTSSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPINCTNSSLVALCDTCNEKYEQEVADNVKVGPSTSSPTSLPWLQKVNVESDKVLMGLAKTNEDNTSLNTTIFGLQRKWSDICQHLHQNKSLPEINVSQTLTRFQAPFHEGFQFGRGTCNKALSLDEIHRSNPIPYMSKELQTSFSSKHILPVSSLPFDTTLSVNDKTEHVAKVAKCDQKSSSSLTPVTTDLVLGTTYASATRDEPDTPKLSDHKKHLHHLSDSLSTDFDAVNENTSNQIARSSSYSCPNLEGKFETVDFKSLYKLLTEKVWWQDEAIYSIIRTMTLCKSSAGKRSGSNVRADTWFSFLGLDRVGKRKIASALAETLFGSKQSLISVDLNSRDRFQPLDSIFECHDVLRRKTVVDYIAGELSKKPHSVVFLENIDKADLLVQNSLFQSIKTGKFPYSHGREISINNVIFVVTSSVFKDCGFFEVEKETKMFPEERILEAKRCQMQLSLGHASEDAKRSSSRNVSVAMRKGTLKHSFLNKRKLVESGDSNEKVTCKTPKHVVEASRSYLDLNMPLEEVEDTDYDDCEKESVVQNHEAWLNDFIEQIDGKVVFKPFNFDFLAEQVIECIDKQFQRTFGSEFQLEIDYEVMSQILAAAWLSDKKKAVEDWIEHVLGNSFAEAQKKYHHANEYVMKLVKCENIFVEEQALEVCLPARINLN 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01272 1074 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1074 - -
Car05g01272 1074 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Car05g01272 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 832 IPR027417 -
Car05g01272 1074 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1074 - -
Car05g01272 1074 SUPERFAMILY Double Clp-N motif 12 125 IPR036628 -
Car05g01272 1074 Gene3D - 10 180 IPR036628 -
Car05g01272 1074 Pfam AAA domain (Cdc48 subfamily) 713 832 IPR003959 GO:0005524|GO:0016887
Car05g01272 1074 Gene3D - 639 902 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01272 Car-Chr5 56300083 56306602 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01272 - - gmx:100776148 1424.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01272 05 56300083 56306602 Car05g01272 05 56300083 56306602 ECH
Car05g01272 05 56300083 56306602 Car05g01475 05 59028943 59033182 ECH
Car05g01272 05 56300083 56306602 Car02g01340 02 39492874 39498599 ECH
Car04g02065 04 26273665 26277694 Car05g01272 05 56300083 56306602 ECH
Car05g01272 05 56300083 56306602 Car02g01340 02 39492874 39498599 PCT