Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01577 atgGGTcgtcttcttctctttctttttcttctcagtTTCTTAGTATTGTCTTTTCTCTCAGAGGTGCAGTCAACGTCGTTCAAGATTGTGAACAAGTGTCGATACACGATATGGCCCGGTTTGCTATCCGGTGCTACTTCGCCGGAGCTTCCCACCACTGGGTTCGTTCTGAAAAGCGGCAAGTCCAGGACAATAAATATCCCGAAATCTTGGTCGGGTCGCATATGGGCTCGGACCCTCTGTGGCCAAGACACTGACGGAAAGTTCTCTTGTTTAACCGCCGACTGTGGTTCCGGCAAAGTAGAGTGCATCGGCGGGGCTAAGCCGCCCGCTACATTGGCTGAGTTCACGCTGAACGGCGCCGATGGGTTGGACTTCTATGACGTAAGCTTAGTGGATGGCTACAACCTCCCCATGTTGATCGTCGCCAAGGGAGGTAAAAGAGGTGGATGCAGCGCCACTGGGTGTTTAGTGGAACTCAACGACGCTTGTCCGGCAGCTCTAAAGGTGGCGAGTGAGAATGGGACCGGAAGCTTCGCTTGCAGGAGCGCGTGTGAGGCTTTTGGGGATCCGCAGTATTGTTGCAGTGAGGCTTACAACACGCCTGACACGTGTCACCCATCTGTATATTCGGAGTTCTTCAAGCATGCTTGCCCCCGCGCGTACAGCTACGCATATGATGACAAGACGAGCACCTACACGTGCGCCTCAGCTGACTACTTGATCATATTCTGTCCTTTACCATATACCAGCCAAAAGGTACTGGGAGCGCGAAAAGACAGTGCTCCGCTTCCTCTGGCAGATAGCGAGAAGAAAATTACCCAAATAGCATCTTCACTGTTACTTTatgGCTGTGTTGCTGACTTTCCCACCCCATTTCATACAGGACTTGCTGATATGAGATCACTGCAAACACTTTGTACCTGCTTTTGCTGTTCATA 941 0.4963 MGRLLLFLFLLSFLVLSFLSEVQSTSFKIVNKCRYTIWPGLLSGATSPELPTTGFVLKSGKSRTINIPKSWSGRIWARTLCGQDTDGKFSCLTADCGSGKVECIGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGKRGGCSATGCLVELNDACPAALKVASENGTGSFACRSACEAFGDPQYCCSEAYNTPDTCHPSVYSEFFKHACPRAYSYAYDDKTSTYTCASADYLIIFCPLPYTSQKVLGARKDSAPLPLADSEKKITQIASSLLLYGCVADFPTPFHTGLADMRSLQTLCTCFCCS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01577 313 PANTHER OS03G0233200 PROTEIN 5 257 IPR001938 -
Bva13g01577 313 SMART tha2 27 246 IPR001938 -
Bva13g01577 313 Pfam Thaumatin family 31 246 IPR001938 -
Bva13g01577 313 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Bva13g01577 313 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Bva13g01577 313 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Bva13g01577 313 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Bva13g01577 313 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Bva13g01577 313 Gene3D Thaumatin 25 246 IPR037176 -
Bva13g01577 313 SUPERFAMILY Osmotin, thaumatin-like protein 26 246 IPR037176 -
Bva13g01577 313 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Bva13g01577 313 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 5 257 - -
Bva13g01577 313 ProSiteProfiles Thaumatin family profile. 24 246 IPR001938 -
Bva13g01577 313 CDD TLP-PA 26 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01577 Bva-Chr13 9409540 9412995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01577 5 282 Receptor kinase-like Gene Family AT5G38280 47.387 9.57e-84 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01577 - - gmx:100802252 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01577 13 9409540 9412995 Bva13g01577 13 9409540 9412995 ECH
Bva13g01577 13 9409540 9412995 Bva14g02317 14 19982198 19984541 ECH
Bva06g01900 06 12957885 12960467 Bva13g01577 13 9409540 9412995 ECH
Bva10g00928 10 6972555 6974931 Bva13g01577 13 9409540 9412995 ECH
Bva13g01577 13 9409540 9412995 Bva08g00862 08 4431626 4433489 ECH