Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01900 ATGCCTCGGCTAACACTATTATTTTCGTTTATGTTAACGCTTCATCTATTGGTATCAGGAGTAATTTCAACCACATTTACAATGGTGAACAAATGTGACTACACTGTATGGCCAGGAATTCTTTCAAACGCTGGAGTTGCTCCTCTTTCCACCACCGGCTTTGTTCTTCAAACGGGTGAGTCCAAGACAATCAATGCGCCCACCTCTTGGGGAGGTCGCTTCTGGGGTCGAACTAGCTGCACCCAAGACTCCACCGGCAAGTTTTCTTGTGTCACCGGTGACTGCGGATCAGGGAAGCTAGAATGCTCCGGAAGAGGGGCCACGCCACCAGCCACCTTGGCCGAATTCACTTTAGGCGGAGCCGGTGGCCTTGATTTCTTCGATGTCAGCTTGGTAGACGGCTATAACGTCCCTATGCTGGTTGTTCCCCAGGGTGGTTCCGGCGCCAATTGCACGAGTACCGGTTGCGTTGTGGATCTGAACGGCGCGTGTCCTTCAGAGCTAAAGGTTATGAGCGTGGATAGCAAACGAGGCGTGGCGTGCAAGAGCGCATGCGAAGCCTTCGGCACTCCCCAATACTGTTGCAGTGGCGCGTATGGTACTCCAGACACTTGCAAACCGTCTTCCTACTCTCAGATCTTCAAGAGCGCTTGCCCACGCGCCTATAGTTATGCATACGACGATAAGACGAGCACCTTCACATGTGCGTCTGCAGATTATACCATTACCTTTTGTCCTGCCCCTAACACCAGTCAGAAAGCGTCTCAGGACCAAAACACGCCACCGGAAAACCCTGTGCTTAACAACACCACAATGGAATATGAAGGTGCTTTTGATCAAAGTGAGATATCGTGGGCCACGTGTACCAACGGCTTCGAATACCAAGCGATGGCCGGCATTGTCAGCATTGCAGTGGCCGTTTGGCGGTTGAGTCAGCTCATcta 944 0.5169 MPRLTLLFSFMLTLHLLVSGVISTTFTMVNKCDYTVWPGILSNAGVAPLSTTGFVLQTGESKTINAPTSWGGRFWGRTSCTQDSTGKFSCVTGDCGSGKLECSGRGATPPATLAEFTLGGAGGLDFFDVSLVDGYNVPMLVVPQGGSGANCTSTGCVVDLNGACPSELKVMSVDSKRGVACKSACEAFGTPQYCCSGAYGTPDTCKPSSYSQIFKSACPRAYSYAYDDKTSTFTCASADYTITFCPAPNTSQKASQDQNTPPENPVLNNTTMEYEGAFDQSEISWATCTNGFEYQAMAGIVSIAVAVWRLSQLI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01900 314 Gene3D Thaumatin 24 246 IPR037176 -
Bva06g01900 314 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Bva06g01900 314 PANTHER BNAA02G17480D PROTEIN 4 271 - -
Bva06g01900 314 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Bva06g01900 314 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Bva06g01900 314 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Bva06g01900 314 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Bva06g01900 314 SMART tha2 26 246 IPR001938 -
Bva06g01900 314 MobiDBLite consensus disorder prediction 250 269 - -
Bva06g01900 314 PANTHER OS03G0233200 PROTEIN 4 271 IPR001938 -
Bva06g01900 314 CDD TLP-PA 25 245 - -
Bva06g01900 314 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Bva06g01900 314 Pfam Thaumatin family 30 246 IPR001938 -
Bva06g01900 314 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01900 Bva-Chr6 12957885 12960467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01900 4 246 Receptor kinase-like Gene Family AT5G38280 56.911 2.12e-97 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01900 - - gmx:100787631 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01900 06 12957885 12960467 Bva13g01577 13 9409540 9412995 ECH
Bva06g01900 06 12957885 12960467 Bva14g02317 14 19982198 19984541 ECH
Bva06g01900 06 12957885 12960467 Bva06g01900 06 12957885 12960467 ECH