Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00161 ATGTCAAGCTCAAACTCAAGCACACTGAAGGAGATGAGGAACGGCAGCGTTTCAGAGAATGGCCTGGATTATAAGTCCGGTTACGGTTACGGTGGGGGTGTTAAGGACCAGTATGGCGAGGATAGTGCCACCGAGGACCAGCTTATCACTCCATGGAGTTTCTCAGTTGCTAGTGGCTCCACCTTGCTGCGTGATCCACGCTACAACAAAGGACTTGCCTTcactgagaaagaaagagatgctCATTACTTGCGTGGCCTTCTGCCGCCAGCTATCTTCACACAGGAGCTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGATACATGGCCATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTTTGATCGACAATGTTGAGGAGCTGCTTCCTGTTGTTTACACCCCAACAGTTGGAGAAGCCTGCCAGAAATATGGAAGCATTTTTAGGCGCCCTCAGGGTCTGTACATCAGCTTGAAAGAGAAGGGCAAGATCCTTGAAGTGCTGAAAAACTGGCCAGAAAAGACCATTCAAGTTATTGTTGTGACAGATGGCGAGCGTATTTTGGGACTTGGAGATCTTGGTTGCCAGGGGATGGGGATCCCTGTTGGAAAGCTTTCTCTGTATACAGCATTGGGAGGTGTTCGCCCTTCATCTTGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTACTGAACAATGAATTCTACATTGGGCTTAGACATAAGCGGGCAACAGGGAAGGAATACGAGGAGCTTCTAGAAGAGTTTATGCATGCAGCTAAGCAGAACTATGGGGAGAAAGTCTTAATCCAGTTCGAAGATTTTGCAAATCATAATGCATTTGATCTGCTGGCAAAATACAGCAAATCGCATCTCGTCTTTAATGATGATATACAGGGCACTGCATCCGTGGTGTTAGCAGGCTTGCTTGCTTCCCTTAAATTAGTTGGGGGAACATTGGCTGATCACAAGTTCTTGTTCCTTGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATTGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCCTTGGAAGAGACCCGCAAGAAGATTTGGCTTGTAGATTCAAAGGGATTGATTGTTAGCTCTCGTATGGAATCACTTCAGCAATTCAAAAAGCCTTGGGCTCATGAGCATGAACCTGTAAAGGGACTTCTAGATGCTGTCAAGGCAATCAAGCCAACAGTTTTAATAGGATCATCTGGAGTAGGGAAGACATTTACAAAGGAAGTGGTTGAAGCCATGGCATCCTTGAATGAGAAACCACTGATTCTTGCTCTCTCCAACCCAACTTCACAATCCGAGTGCACAGCAGAAGAAGCTTATACATGGAGTAAGGGTCGAGCAATTTTTGCTAGTGGAAGCCCATTCGACCCCGTTGAATATGAAGGAAAAGTTTTCGTGCCTGGACAGGCCAATAATGCTTACATATTCCCTGGCTTCGGTTTGGGTTTAATCATCTCCGGTGCAATTCGTGTACGGGATGAGATGCTCTTGGCAGCTTCTGAAGCTTTGGCTGCACAAGTAACACAAGAGAACTTCGATAAGGGATTGATTTACCCACCTTTCACCAATATCAGAAAGATATCAGCCCACATTGCCGCTGACGTTGCAGCTAAGGCATATGAGCTTGGTTTGGCTTCACATCTACCTCGACCCAAGGATCTTGTTAAATACGCGGAGAGCTGCATGTACAGCCCAGTCTACCGCAGCTACCGTTG 1796 0.4582 MSSSNSSTLKEMRNGSVSENGLDYKSGYGYGGGVKDQYGEDSATEDQLITPWSFSVASGSTLLRDPRYNKGLAFTEKERDAHYLRGLLPPAIFTQELQEKRLMHNLRQYEVPLHRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNNEFYIGLRHKRATGKEYEELLEEFMHAAKQNYGEKVLIQFEDFANHNAFDLLAKYSKSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHKFLFLGAGEAGTGIAELIALEISKQTKAPLEETRKKIWLVDSKGLIVSSRMESLQQFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVTQENFDKGLIYPPFTNIRKISAHIAADVAAKAYELGLASHLPRPKDLVKYAESCMYSPVYRSYR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00161 598 SMART malic_2 123 304 IPR012301 GO:0004471
Bva10g00161 598 PANTHER MALIC ENZYME 27 598 - -
Bva10g00161 598 MobiDBLite consensus disorder prediction 1 20 - -
Bva10g00161 598 Gene3D - 57 311 IPR037062 GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 310 326 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 285 303 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 225 247 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 189 218 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 129 153 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 341 357 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PRINTS Malic enzyme signature 444 460 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 Gene3D - 312 598 - -
Bva10g00161 598 ProSitePatterns Malic enzymes signature. 310 326 IPR015884 GO:0004471
Bva10g00161 598 CDD NAD_bind_1_malic_enz 314 592 - -
Bva10g00161 598 SMART Malic_M_2 314 567 IPR012302 GO:0051287
Bva10g00161 598 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 43 313 IPR046346 -
Bva10g00161 598 Pfam Malic enzyme, NAD binding domain 314 566 IPR012302 GO:0051287
Bva10g00161 598 Pfam Malic enzyme, N-terminal domain 123 303 IPR012301 GO:0004471
Bva10g00161 598 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 314 597 IPR036291 -
Bva10g00161 598 PIRSF ME 21 598 IPR001891 GO:0004470|GO:0004471
Bva10g00161 598 PANTHER MALIC ENZYME-RELATED 27 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00161 Bva-Chr10 3099116 3103802 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00161 K00029 - gmx:100801564 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00161 10 3099116 3103802 Bva10g00161 10 3099116 3103802 ECH
Bva03g00551 03 3192222 3196326 Bva10g00161 10 3099116 3103802 ECH
Bva04g00712 04 4681001 4685660 Bva10g00161 10 3099116 3103802 ECH
Bva08g02192 08 14384791 14390084 Bva10g00161 10 3099116 3103802 ECH
Bva02g02360 02 23112225 23117448 Bva10g00161 10 3099116 3103802 ECH