Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1106 ATGGCTTCTTCAACTCAATTTCCCACCATTTTGGTCACGTTATATTTGTTCCAATTCCTAGCAGGTTCGTATTCAACGACATTCACAATTGTTAACAAGTGCAGCTACACAGTTTGGCCCGGCATTTTATCCGGCGCCGGGACCTCGCCGCTCTCCACCACCGGCTTCGTCCTTCAACCCGGCGAGTCCAACGTCATCCAAATGCCACCCGCTTGGTCCGGCCGACTCTGGGGGAGGACCCACTGCTCCCAAGACGCCACCGGAAATTTCTCCTGTGTCACCGGCGACTGTGGTTCCTCCACCGTAGAATGCGCCGGCGGAAACGCGGCTCCGCCGGCCACACTTGCTGAATTCACCCTTAACGGCGCCGGCGGGATGGATTTCTTTGACGTGAGCCTCGTCGACGGATACAACCTCCCCATGATTGTAGAGCCTCAGGGCGGAACCGGCGCCGGGAACTGCACAACGACGGGTTGCGTGGTGGACTTGAACGCGGCATGCCCGACGGAGCTCAAGGTGATGGGTGGCGGCGACGGCGTGGCATGCAAAAGCGCGTGCGAAGCTTTCGGGGATCCGCAGTATTGCTGCAGTGGCGCTTACGCGACGCCTGACACATGCAAACCAAGTTCCTACTCGCAGTTCTTCAAGAGCGCGTGCCCACGCGCTTACAGCTACGCTTATGACGATGGCTCCAGCACCTTCACCTGTGCCTCTGCTGATTACACCATCACTTTCTGTCCCTCACCATCCCCCAGTTCGATTAAGTCGGGGAACGGGAAATACCCAATGGCGGTGGAGACTTCTGGAGTTAGTAACGTGGACATGAAAGCTAACAACGTTATGGCGGTGGCCGTTGTTTCTATTCTGGTGTCGTTTTGGAGTTTACGGCAACTGAATTAG 900 0.5656 MASSTQFPTILVTLYLFQFLAGSYSTTFTIVNKCSYTVWPGILSGAGTSPLSTTGFVLQPGESNVIQMPPAWSGRLWGRTHCSQDATGNFSCVTGDCGSSTVECAGGNAAPPATLAEFTLNGAGGMDFFDVSLVDGYNLPMIVEPQGGTGAGNCTTTGCVVDLNAACPTELKVMGGGDGVACKSACEAFGDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGSSTFTCASADYTITFCPSPSPSSIKSGNGKYPMAVETSGVSNVDMKANNVMAVAVVSILVSFWSLRQLN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1106 299 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Apr7g1106 299 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Apr7g1106 299 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Apr7g1106 299 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Apr7g1106 299 PANTHER OS03G0233200 PROTEIN 16 266 IPR001938 -
Apr7g1106 299 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
Apr7g1106 299 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 16 266 - -
Apr7g1106 299 Gene3D Thaumatin 26 247 IPR037176 -
Apr7g1106 299 SMART tha2 28 247 IPR001938 -
Apr7g1106 299 CDD TLP-PA 27 246 - -
Apr7g1106 299 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Apr7g1106 299 Pfam Thaumatin family 32 247 IPR001938 -
Apr7g1106 299 PIRSF PR5 1 290 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1106 Apr-Chr7 18040894 18046645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1106 9 248 Receptor kinase-like Gene Family AT5G38280 52.869 2.70e-89 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1106 - - gmx:100807106 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0355 3 7019584 7021217 Apr7g1106 7 18040894 18046645 ECH
Apr9g0639 9 10405950 10406810 Apr7g1106 7 18040894 18046645 ECH
Apr7g1106 7 18040894 18046645 Apr7g1106 7 18040894 18046645 ECH
Apr7g1106 7 18040894 18046645 Apr3g0356 3 7036183 7037662 PCT