Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0355 ATGACTGCTTCAATTCAAATTTCTGCCACTCTCATCTTCCTATTTATCTTCCACTTTTTAAGAGGTTCAAATTCAGCGACATTTACAATCGTAAACAAATGCAGCTACCCCGTGTGGCCGGGAATTTTATCCGGCGCCGGAACGGCGCAACTCGCCACCACAGGCTTTGCTCTGCAACCGGGCGAGTCCAACGCCGTCGCCGTACCGGCCGGTTGGTCCGGTCGCCTGTGGGGTAGAACGCTATGCTCCACCGACTCCGCCGGAAAATTTTCCTGCGCCACCGGAGACTGCGGATCCTCCGCCGTGCAATGCAGAGGTGGCGGTGCCTTGCCGCCGGCGACGCTGGCGGAGTTCACGTTGAACGGCGCGGGGGGACTGGATTTCTACGACGTGAGCCTGGTTGACGGCTACAACCTCGCCATGACGGTGGAGGCCCACGGCGGCGGCGGGAACTGCACGGCGACGGGGTGCATGGCGGATTTGAATGGAGGGTGTCCGGCGGAACTGAAGGTGAAGATGGCGGCGGGTGGTGAGGGCGTGGCGTGCAAGAGCGCGTGTGAAGCTTTTGGGGATCCACGGTATTGTTGCAGTGGGGAATACGCTACACCTCAGACATGCAAGCCAAGCTCCTACTCGCAGTTGTTCAAGAGCGCGTGCCCACGCGCTTATAGCTACGCCTATGATGATGCCACCAGCACCTTCACTTGTGCCTCCGCGGATTACCTCATCACTTTCTGCCCCTCGCCCTCCAAAAGTTCGATAAAATCAGGGAATGGGAAATTCCCAATTGCAGTGGACATCTCAGTAGGCCATGCCCACAGAGATAAGTCAGCCAAGGCTATGACAGTAGCTACTGCCGCTCTTCTACTGACAATATGGTGGCAACTCAATTAG 894 0.5716 MTASIQISATLIFLFIFHFLRGSNSATFTIVNKCSYPVWPGILSGAGTAQLATTGFALQPGESNAVAVPAGWSGRLWGRTLCSTDSAGKFSCATGDCGSSAVQCRGGGALPPATLAEFTLNGAGGLDFYDVSLVDGYNLAMTVEAHGGGGNCTATGCMADLNGGCPAELKVKMAAGGEGVACKSACEAFGDPRYCCSGEYATPQTCKPSSYSQLFKSACPRAYSYAYDDATSTFTCASADYLITFCPSPSKSSIKSGNGKFPIAVDISVGHAHRDKSAKAMTVATAALLLTIWWQLN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0355 297 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
Apr3g0355 297 Pfam Thaumatin family 32 247 IPR001938 -
Apr3g0355 297 PANTHER OS03G0233200 PROTEIN 9 266 IPR001938 -
Apr3g0355 297 SMART tha2 28 247 IPR001938 -
Apr3g0355 297 PIRSF PR5 1 289 IPR001938 -
Apr3g0355 297 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 266 - -
Apr3g0355 297 Gene3D Thaumatin 26 247 IPR037176 -
Apr3g0355 297 CDD TLP-PA 27 246 - -
Apr3g0355 297 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Apr3g0355 297 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Apr3g0355 297 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Apr3g0355 297 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Apr3g0355 297 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0355 Apr-Chr3 7019584 7021217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0355 7 248 Receptor kinase-like Gene Family AT5G38280 52.227 2.86e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0355 - - gmx:100809419 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0355 3 7019584 7021217 Apr7g1106 7 18040894 18046645 ECH
Apr9g0639 9 10405950 10406810 Apr3g0355 3 7019584 7021217 ECH
Apr3g0355 3 7019584 7021217 Apr3g0355 3 7019584 7021217 ECH