Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0356 ATGTCCCCCTTCTCACATCACCAACATTATTCTCAAAGATTCCTCATTCTCTTAATTATCCTCCTTTTCAGAGGGGTTCGTGTTTGGAGCACTACATTCACATTCGTGAACAAGTGTGAGCACACAGTGTGGCCGGGGGTTCTAGGAAAACCTGACCTAGGAACCACCGGCTTCGAGCTCAAAAAGGGTGAAACACGCACCTTCCAAGCACCACCGGCATGGTCGGGGCGCTTCTGGGGCAGAACCGGTTGCGATTTCGACGACTCCGGCCACGGAACCTGCGCCACCGGCGATTGCGGCTCCGGCGAAATCAACTGCAATGGGAACGGCGCAGCGCCGGTGACTCTCGCTGAGTTCACGCTAGGTTCGGGTTCACCGGATTACTACGACGTCAGCCTCGTCGACGGTTATAACCTCCCGATGATGGTGGAAACGAGTGGCGGTTCTGGGTCGTGCGCCACCACGGGTTGCGGTGCGGACCTTAACCGGCGGTGTCCGTCGGAGTTGAGGGTGGACGGCGGCGACGCGTGTCAGAGCGCGTGTCACGCGTTTGAGAAACCTGAGTATTGTTGCAGTGGTGAGTTTAACTCACCGTCGGCGTGTACGCCTTCAATGTACTCGCAGATTTTCAAGTCTGCGTGCCCCAAATCTTATAGCTATGCGTTTGATGATGCCACCAGCACGTTTACTTGCACCGGTGCCGATTACACCCTCACATTTTGTCCTTCTTCCTCTCCAAGTTTGAAGTCATTAATGGAGTCGGGGCCAGGATCATCGGTTGAGCAAGCTGCAGTAGCAACTACTTCGTGGATAGCCAATTTGGCCACAGGAGGCTCCACCACTACCCAACCATTTTCAGCTTCCAAGTCTGCATTCTTTGTGGCTGTCACTTTCATTCTTTCCTATTTAGTCTCTTAG 918 0.5392 MSPFSHHQHYSQRFLILLIILLFRGVRVWSTTFTFVNKCEHTVWPGVLGKPDLGTTGFELKKGETRTFQAPPAWSGRFWGRTGCDFDDSGHGTCATGDCGSGEINCNGNGAAPVTLAEFTLGSGSPDYYDVSLVDGYNLPMMVETSGGSGSCATTGCGADLNRRCPSELRVDGGDACQSACHAFEKPEYCCSGEFNSPSACTPSMYSQIFKSACPKSYSYAFDDATSTFTCTGADYTLTFCPSSSPSLKSLMESGPGSSVEQAAVATTSWIANLATGGSTTTQPFSASKSAFFVAVTFILSYLVS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0356 305 ProSiteProfiles Thaumatin family profile. 30 242 IPR001938 -
Apr3g0356 305 CDD TLP-PA 32 241 - -
Apr3g0356 305 SUPERFAMILY Osmotin, thaumatin-like protein 31 243 IPR037176 -
Apr3g0356 305 Pfam Thaumatin family 37 242 IPR001938 -
Apr3g0356 305 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Apr3g0356 305 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Apr3g0356 305 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Apr3g0356 305 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Apr3g0356 305 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Apr3g0356 305 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Apr3g0356 305 SMART tha2 33 242 IPR001938 -
Apr3g0356 305 PANTHER OS03G0233200 PROTEIN 8 266 IPR001938 -
Apr3g0356 305 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Apr3g0356 305 Gene3D Thaumatin 31 242 IPR037176 -
Apr3g0356 305 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 8 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0356 Apr-Chr3 7036183 7037662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0356 15 279 Receptor kinase-like Gene Family AT5G38280 44.086 9.14e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0356 - - gmx:100808342 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0356 3 7036183 7037662 Apr3g0356 3 7036183 7037662 ECH
Apr3g0356 3 7036183 7037662 Apr7g1107 7 18058874 18060677 ECH
Apr5g1840 5 21570601 21574538 Apr3g0356 3 7036183 7037662 ECH
Apr7g1106 7 18040894 18046645 Apr3g0356 3 7036183 7037662 PCT