LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr6g1013	ATGGGCACATGGAGAAAGGAAATTTCAGGAGAAGCAAAGAAGCAGCTATGGTTGGCAGGGCCAATGGTATTTGTGTCTGTGTTTCAATACAGTTTACAAATGATATCTCTCATGTTTGTAGGCCACTTGGATGAGTTGCTTCTAGCTGCTGCTTCTTTGGCTACTTCATTTCTAAATGTCACTGGTTTCAGTGTATTGATAGGTATGTCAAGCGCATTGGACACATTTTGTGGTCAATCATATGGAGCACAGCAGTATCATATGGTTGGAATACACATGCAGAGAGCCATAGTGGTAACCATGCTTGTTACTATGCCCGTGACCATTATTTGGGCATTCTTGAAACCAATTCTAGTCGTTCTTCATCAAGACAAAACAATCGCAGCACAAGCTCAACTATATGCACGTTACTTGATTCCAAGCCTTTCTGCCAATGCTCTTCTTCGGTGCTTTGTCAAGTTTCTTCAAACACAAAACAATGTGTTTCTTTTGTTTCTGGCCACTGGATTCACCACCTTAACACATGTCCTTTTATGTTGGCTTTTGGTTCTAAAATTTAAGCTTGGCATCAAAGGAGCTGCCATTGCATTTTGCATTTCAAATTGGATTAACACAGTACTACTAGCACTTTACATCAAGTTCTCCGCTTCCTGCAAAAGCACTTGGACTGGGTTCTCAAGGGAATGTTTGCATAACATCCCTCAATTTCTCAGGCTTGCTTTTCCTTCAACACTCATGGTCTGGTTAGAACAATGGACGTTTCAGCTAATGGTGCTACTAGCTGGTGCTCTTCCTAATCCAAAATTGCAAACCTCAGTGCTTTCTATCTGCTTTAATACAACTGGTCTGTTATGGATGATACCCCTTGGAGTTAGTGCTGCTTCAAGTACAAGGATCTCAAATGAACTTGGAGCTGGCCGTGCAAAAGGTGCATATTTAGCTGTCAAAGTCACCTTATTATTGGCCTTCATAGTTGGGGCTTTAGGATTTACTCTCCTTATGGTGACAAGGAACATTTGGGGCCATATTTTTACCGATGTACCAGAAGTAGTCCGTTATGTGGCATCCTTGACACCGATTCTTGCATGCTCTGTCTTTGTAGATTCAATTCAAACAGCATTATCAGGTGTTGCCAGAGGATGTGGTTGGCAGAAGTTTGGTGCATTTGTCAATCTTGGATCTTACTATCTCTTGGGTGCTCCTTTAGCAATTGTGCTAGCATTTGTCCTCAAAATGAAAGGAAAGGGGCTCCTTTTTGGGATTGTGCTTGCACTTATTATGCAAGTGGTGTGTTTTCTTGTGGTCACCTTTCGCACCAATTGGGACAAAGAAGCAAACAAAGCAGTAAAAAGAGTAAGAGACAATGGAGTCCAAGATGATGCAAATGCTTTGCCAAGTCACCAAAATGGAAATCTTTGGTAG	1422	0.4163	MGTWRKEISGEAKKQLWLAGPMVFVSVFQYSLQMISLMFVGHLDELLLAAASLATSFLNVTGFSVLIGMSSALDTFCGQSYGAQQYHMVGIHMQRAIVVTMLVTMPVTIIWAFLKPILVVLHQDKTIAAQAQLYARYLIPSLSANALLRCFVKFLQTQNNVFLLFLATGFTTLTHVLLCWLLVLKFKLGIKGAAIAFCISNWINTVLLALYIKFSASCKSTWTGFSRECLHNIPQFLRLAFPSTLMVWLEQWTFQLMVLLAGALPNPKLQTSVLSICFNTTGLLWMIPLGVSAASSTRISNELGAGRAKGAYLAVKVTLLLAFIVGALGFTLLMVTRNIWGHIFTDVPEVVRYVASLTPILACSVFVDSIQTALSGVARGCGWQKFGAFVNLGSYYLLGAPLAIVLAFVLKMKGKGLLFGIVLALIMQVVCFLVVTFRTNWDKEANKAVKRVRDNGVQDDANALPSHQNGNLW*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr6g1013	473	CDD	MATE_eukaryotic	11	447	IPR045069	GO:0042910\|GO:1990961
	Apr6g1013	473	PANTHER	PROTEIN DETOXIFICATION	2	452	-	-
	Apr6g1013	473	TIGRFAM	matE: MATE efflux family protein	21	417	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Apr6g1013	473	Pfam	MatE	242	404	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Apr6g1013	473	Pfam	MatE	21	181	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Apr6g1013	473	PANTHER	MULTIDRUG RESISTANCE PROTEIN	2	452	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr6g1013	Apr-Chr6	14830039	14834921	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr6g1013	K03327		-	gmx:100813142	762.681

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr6g1013	6	14830039	14834921	Apr2g1548	2	21369538	21372638	ECH
	Apr4g2721	4	35805143	35810055	Apr6g1013	6	14830039	14834921	ECH
	Apr6g0405	6	4631522	4637069	Apr6g1013	6	14830039	14834921	ECH
	Apr6g1013	6	14830039	14834921	Apr6g1013	6	14830039	14834921	ECH