Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1840 ATGGGTACTACGTTTACATTTGTAAACAGATGCCACTACACAGTGTGGCCAGCTATTCTTGCAAATGCCGGTAGCCCAAAGCTCGAAACCACAGGCTTCGAACTCCCCAAGGACTCTTCCACCTCTTTCCCAGCTCCCTCCGGCTGGTCCGGTCGTTTCTGGGCACGAACCGGTTGCAATTTCGACGGATCCGGTTCCGGGACTTGCCTCACCGGCGACTGTGGCTCCGGCCACCTCCAATGCGATGGTGCGGGTGCAGCCCCGCCGGTGACGCTCGCCGAGTTCACGCTCGGCACTGTTGGCCAAGACTTTTACGACGTGAGTCTTGTTGACGGGTACAATCTTCCGATGATCGTGGAAGGGAGTGGCGCGTCGGGTATGTGTGCTTCGACGGGATGCACGTCGGATCTCAGCCTGCAATGCCCGACGGAGTTGAAAGGCGGGGACGGCAGCGCGTGCATGAGCGCATGTGAGGCCTTTGGTAGCCCTGAGTACTGCTGTAGCGGCGAGTATAGCTCGCCGGCGACATGTAGGCCCTCTGTGTACTCGGAAATGTTCAAGGCTGCATGCCCATCTTCCTATAGTTACGCTTATGACGATGCTTCCAGTACTTTTACTTGTGCTGCTTCCGATTACACGCTCACCTTCTGTCCGTCCTCTCCCAGTCAGAAATCTTCACGAGAGACAAGTCCCATGACCACAACAACTTCACAACAAGGGGGATCGACGGTTTCGGAGCAGGGTGTTGGGTATTCGATTGATGGTTATGATTCAGGGTCTGGAGAGGACGTGCTAGCAGATGGGTCATATTTGGCTGGTTTGGCTATGGGAGACTCTCATAGGACGTTTCCTTTCTCTGTGTTAGTCTACTACATTGTTAGCCTTTTGCTTTTTCTCTTCATGATCTAG 909 0.5435 MGTTFTFVNRCHYTVWPAILANAGSPKLETTGFELPKDSSTSFPAPSGWSGRFWARTGCNFDGSGSGTCLTGDCGSGHLQCDGAGAAPPVTLAEFTLGTVGQDFYDVSLVDGYNLPMIVEGSGASGMCASTGCTSDLSLQCPTELKGGDGSACMSACEAFGSPEYCCSGEYSSPATCRPSVYSEMFKAACPSSYSYAYDDASSTFTCAASDYTLTFCPSSPSQKSSRETSPMTTTTSQQGGSTVSEQGVGYSIDGYDSGSGEDVLADGSYLAGLAMGDSHRTFPFSVLVYYIVSLLLFLFMI* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1840 302 CDD TLP-PA 4 217 - -
Apr5g1840 302 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 2 240 - -
Apr5g1840 302 Pfam Thaumatin family 9 218 IPR001938 -
Apr5g1840 302 PRINTS Pathogenesis-related protein signature 4 16 IPR001938 -
Apr5g1840 302 PRINTS Pathogenesis-related protein signature 52 63 IPR001938 -
Apr5g1840 302 PRINTS Pathogenesis-related protein signature 65 94 IPR001938 -
Apr5g1840 302 PRINTS Pathogenesis-related protein signature 103 119 IPR001938 -
Apr5g1840 302 PRINTS Pathogenesis-related protein signature 208 217 IPR001938 -
Apr5g1840 302 ProSitePatterns Thaumatin family signature. 65 81 IPR017949 -
Apr5g1840 302 Gene3D Thaumatin 3 218 IPR037176 -
Apr5g1840 302 SUPERFAMILY Osmotin, thaumatin-like protein 3 219 IPR037176 -
Apr5g1840 302 PANTHER OS03G0233200 PROTEIN 2 240 IPR001938 -
Apr5g1840 302 SMART tha2 5 218 IPR001938 -
Apr5g1840 302 ProSiteProfiles Thaumatin family profile. 2 218 IPR001938 -
Apr5g1840 302 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1840 Apr-Chr5 21570601 21574538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1840 1 230 Receptor kinase-like Gene Family AT5G38280 48.347 3.23e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1840 - - aprc:113866338 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1840 5 21570601 21574538 Apr5g1840 5 21570601 21574538 ECH
Apr5g1840 5 21570601 21574538 Apr3g0356 3 7036183 7037662 ECH
Apr5g1840 5 21570601 21574538 Apr7g1107 7 18058874 18060677 ECH