Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0196 ATGGTCTTGCAGAAGAGATTAGACTACGGATTTAATGGCTGTCAGGTTCCGGCCATGCCCCGTGCTTCCCGATCAACTAGGAGGAGGCGTAAATTTCAAAGGAGAGCAGAAGACAATCAAATGCGTGCATTTGACTTATTGGCCACCATAGCTGATAAACTATTGCAAGAGAAAGAAAATCCAACCATGTCTAGTGATACATCATCTGAAAAGGATCAACGTGGATTTGTCAAAGAATGCCAAGATGCAAATAAACCATCCAAATCTGAGCTTTCTGATGAAGGAAATTGTAACAAAAAATGTTGCTCTCATCTTTCTTCACAAACAAACAATCAAAATTGCTGTTTGAAAGAATTCCAACATGCTGAACTTGACGGTCATCCAGGGATTACTTCTATAGTAACAAGTTCTAGTTGCTTAGAGAGGTTCTTTGCAGACAAATTGGTGGATGGCAAAAGCCATATCAAAATGGAAAATTTTACTAGCAAAGTTAAATTAGATTTTTCTGGTTATCCAAAGGATAGTCACTTCAAGGTAGATGGTGACACTAGTAAAGGAAAGGATGGGCTGCATAAGACTGAGAAGGTGCCAAATGGCATTGGCAGTGCTGAGGATCCGTTAGATGAAAATCCTCCCGCATTTATCAGTTTAGGTGGCAATCCCAAATTTTCAGGGTATAGTGATAGGATTCCCTGTAGCTCGTTGTCTAAAGCTTGTGACAATGTACTAGTAGTTAGTAGAGATGATGATGAAAACTCTTCTGGGTGTACTCACCCTAGTAGTACTAAAACCAAGTCCCTTAGGGTGAAGACTTGTATAGGTGATAATAGAATAAGTAAAACCCTGGCTTCTAAATTTCGGAAAGTTGCTGAAAAATCTAAAGATGATACACTTTCTAACTGTGATGGAGATTTGAAGCGAACTTACCACAGTAAGAAGAACTGCAATAAGCGCCAAAATTCTCAGATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAATGGTAGCTATATTTCAAGTTCTAATGGATTTATCGGGAGTCGTGGCATTTATTATTCACCTGAGAATTGTATGAATCAAGATGCATGTGGTTCACTTCCCGGAACGCACAAGGACCCTGGAATATCATCCTTGGAAGAATGTCAACATCAGACGATACGATGTAGAGGTTCTCATGTGAAGCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTCTTTTTTGAGGTTCCGGAAACTTCTACAATTGGGTCCTTGAAGAGGACAGTGATGGATGCAGTGACTGCTGTACTTGGGGGTGAATTACACATTGGTGTTATTCTCCAGGGAAAGAAAGTTTGGGATGACAGTAAAACCCTACTTCAAACCGGAATTTCTCATGATAATCAGCTAGATGCTTTGGGTTTCACCCTGGAGCCTAATTCCTTGCAAAGTCTACCTATTGTGTGTGCTGCACATTCTCTCCATCCTAGCGCTGACATAACACAGCCAGTAACAAGGTATCCTTCGAGCCCAGCTGTTATTCATCAGAGGATTCAAGGCAATTCTGACATATTACCTGAGCATCAAGTTACCAGTTTAGGTAGCATTTTGGAAAGTGACCATGATTCAGCACCTTCTCCTATTAACGCATCTGTGGATGAAGGTACGACAGATATCAAAGAACTGGTAACTGTTCCTGAAATAGATAAGGAGGAACTAGCTATGGTACCTGTACTTCAGAAGCCAAAGCGATCTGAGGTCATACAACGCCGAATACGCAGGCCTTTTTCTGTAGAAGAAGTAGAAGCACTGGTTCAAGCAGTTGAAAAAATGGGAACTGGAAGGTGGCGTGATGTTAAACTTTGTGCTTTTGATAATGCAAAGCATCGGACGTATGTGGATTTGAAGGATAAATGGAAAACACTGGTACACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAGCCCGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTTGCCCACGCTTATTGGTCCCAGCAGCAGGCTAAGCAACAACCCAAGCAGCATCCAGAAAGTGCCTTGTCTTTAAGGGTGTTGTCAGCAACAAGTGACCTTGTTGATGGCATGGGTGTTCTCGTTTCTGACTGTTATTAG 2121 0.4168 MVLQKRLDYGFNGCQVPAMPRASRSTRRRRKFQRRAEDNQMRAFDLLATIADKLLQEKENPTMSSDTSSEKDQRGFVKECQDANKPSKSELSDEGNCNKKCCSHLSSQTNNQNCCLKEFQHAELDGHPGITSIVTSSSCLERFFADKLVDGKSHIKMENFTSKVKLDFSGYPKDSHFKVDGDTSKGKDGLHKTEKVPNGIGSAEDPLDENPPAFISLGGNPKFSGYSDRIPCSSLSKACDNVLVVSRDDDENSSGCTHPSSTKTKSLRVKTCIGDNRISKTLASKFRKVAEKSKDDTLSNCDGDLKRTYHSKKNCNKRQNSQMNIPFKKRKLFNGSYISSSNGFIGSRGIYYSPENCMNQDACGSLPGTHKDPGISSLEECQHQTIRCRGSHVKLRIKSFRVPELFFEVPETSTIGSLKRTVMDAVTAVLGGELHIGVILQGKKVWDDSKTLLQTGISHDNQLDALGFTLEPNSLQSLPIVCAAHSLHPSADITQPVTRYPSSPAVIHQRIQGNSDILPEHQVTSLGSILESDHDSAPSPINASVDEGTTDIKELVTVPEIDKEELAMVPVLQKPKRSEVIQRRIRRPFSVEEVEALVQAVEKMGTGRWRDVKLCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLVAHAYWSQQQAKQQPKQHPESALSLRVLSATSDLVDGMGVLVSDCY* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0196 706 Gene3D - 575 678 - -
Apr3g0196 706 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 683 IPR031105 -
Apr3g0196 706 SMART sant 585 638 IPR001005 -
Apr3g0196 706 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 581 640 IPR017930 -
Apr3g0196 706 SUPERFAMILY Homeodomain-like 587 668 IPR009057 -
Apr3g0196 706 MobiDBLite consensus disorder prediction 179 207 - -
Apr3g0196 706 ProSiteProfiles Myb-like domain profile. 586 636 IPR001005 -
Apr3g0196 706 MobiDBLite consensus disorder prediction 18 37 - -
Apr3g0196 706 Pfam Myb-like DNA-binding domain 586 635 IPR001005 -
Apr3g0196 706 SUPERFAMILY Ubiquitin-like 390 472 IPR029071 -
Apr3g0196 706 CDD SANT_TRF 587 637 - -
Apr3g0196 706 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0196 Apr-Chr3 3662722 3668321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0196 - - gmx:100797436 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0196 3 3662722 3668321 Apr3g0196 3 3662722 3668321 ECH
Apr3g0196 3 3662722 3668321 Apr9g1342 9 23022166 23027267 ECH
Apr3g0196 3 3662722 3668321 Apr10g2026 10 33101338 33106435 ECH
Apr2g2305 2 28008092 28013329 Apr3g0196 3 3662722 3668321 ECH
Apr4g1902 4 26923975 26929354 Apr3g0196 3 3662722 3668321 ECH
Apr2g2305 2 28008092 28013329 Apr3g0196 3 3662722 3668321 PCT