LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr2g1546	ATGAAATTCTGGAGACTGGAAGTAGTGGAAGAAGTGAAGAGGCAGCTATGGTTAGCAGTGCCTCTCTTCTCTGTTGGAATTTTACAGTACATTCTCCAAACCATCTCTGTCATGTTTGTTGGCCATCTTGGGACACTCCCTCTTTCTGGTGCTTCCATGGCCACTTCCTTTGCATCAGTTACTGGCTTCAACTTACTGATGGGTTTGGCGACTGCATTGGACACATTTTGTGGTCAATCAAATGGGGCAGGACAGTACCATATGCTTGGGATACACATGCAACGATCAATGGTTGTTGTTTTAATAATGAGTGTGTTCCTAGCCATAATATGGGCAAACACAGAACCAATTCTTAAAGCTATGCACCAAGACAAAGCCATATCCAAGGAAGCTGGCTCATATGCCCGTTTCATGATCCCAAGTTTATTTGCATACGGTCTTCTTCAGTGCATTCTCAAGTTCTTGCAAACCCAAAACATTGTGTTCCCAATGGTGCTAACCTCTGGAATTGCAGCTTTGCTTCATGTTCTTTTGTGTTGGGTTTTGGTTTTCAAATCAAGGCTTGGAAGCAGAGGGGCAGCCTTATCCAATTCAATATCTTACTGGGTGAATGTGATCTTGATTTCTATTTATGTGAAGTTCTCTTCTTCTTGCAAACAATCATGGACAGGATTTTCAAGTAGGGCCTTGCACAACCTATTTGACTTCCTTAAACTGGCTATTCCTTCAGCTCTTATGCTGTGCTTGAAAGTCTGGACATTTGAATTGATGGTCCTCTTGTCTGGTCTTCTTCCTAACCCAGTGTTAGAAACTTCTGTGCTCTCAATATGCCTTAATACATTTGGTTTAGCATGGATGATCCCTTTTGGATTCAGTGCTGCTGTAAGCATTAGAGTCTCCAATGAACTAGGGGCTGGAAATTCACAAGCTGCAAGTCTAGCAGTTGGGGTGGTGCTATCCATAGCCTTCATTGAAGGGATGCTTTTAGTTTCAACGATGATAGTACTGCGAAATGTCTGGGGACATGTTTATAGTGATGACAAACAAGTAATCAGATATGTGTCAGTAATGATGCCAATTTTGGCCATTTCCAGCTTCCTAGATGGGATCCAAAGTGCACTTTCAGGAATTCTTGCAGGATGTGGATGGCAGAAGATTGGTGCCTATGTGAATCTTGGTTCATTTTATCTTGTGGGTGTTCCTTGTGCTGCTGTATTAGCATTTCTTCTACACATGAAAGCCAAGGGGTTATGGTTGGGAATCATTTCTGCATTTATTATACAAGTTTCATTTTACATTATCATTACTTTTCGAACTAACTGGGAAGAAGAAGCAAGGAAAGCTCAAAGCAGAGTTGAACGCTCAACCATGTCGCCAACTACTAGAGACAACATGTTACCAAATCAAAAAGTGGAACTAATTCCTTAA	1428	0.4153	MKFWRLEVVEEVKRQLWLAVPLFSVGILQYILQTISVMFVGHLGTLPLSGASMATSFASVTGFNLLMGLATALDTFCGQSNGAGQYHMLGIHMQRSMVVVLIMSVFLAIIWANTEPILKAMHQDKAISKEAGSYARFMIPSLFAYGLLQCILKFLQTQNIVFPMVLTSGIAALLHVLLCWVLVFKSRLGSRGAALSNSISYWVNVILISIYVKFSSSCKQSWTGFSSRALHNLFDFLKLAIPSALMLCLKVWTFELMVLLSGLLPNPVLETSVLSICLNTFGLAWMIPFGFSAAVSIRVSNELGAGNSQAASLAVGVVLSIAFIEGMLLVSTMIVLRNVWGHVYSDDKQVIRYVSVMMPILAISSFLDGIQSALSGILAGCGWQKIGAYVNLGSFYLVGVPCAAVLAFLLHMKAKGLWLGIISAFIIQVSFYIIITFRTNWEEEARKAQSRVERSTMSPTTRDNMLPNQKVELIP*	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr2g1546	475	CDD	MATE_eukaryotic	11	447	IPR045069	GO:0042910\|GO:1990961
	Apr2g1546	475	PANTHER	PROTEIN DETOXIFICATION	2	453	-	-
	Apr2g1546	475	Pfam	MatE	242	403	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Apr2g1546	475	Pfam	MatE	21	181	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Apr2g1546	475	TIGRFAM	matE: MATE efflux family protein	21	418	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Apr2g1546	475	PANTHER	MULTIDRUG RESISTANCE PROTEIN	2	453	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr2g1546	Apr-Chr2	21352480	21355133	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr2g1546	K03327		-	gmx:100776083	813.142

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr6g1015	6	14845910	14848796	Apr2g1546	2	21352480	21355133	ECH
	Apr2g1546	2	21352480	21355133	Apr2g1546	2	21352480	21355133	ECH
	Apr2g1546	2	21352480	21355133	Apr6g1014	6	14837589	14842365	PCT
	Apr6g1012	6	14823282	14827154	Apr2g1546	2	21352480	21355133	PCT