Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1012 ATGGGCATATGGAAAAAGGAAATTGTAGAAGAAGCAAAGAAACAACTATGGCTGGCAGGGCCTATGATATGTGTCTGTGTGTTTCAGAACAGTTTACAAATGATATCTGTTATGTTTGTAGGCCATTTGGATGAGCTTTTTCTGGCTGGTGCTTCTTTGGCTACTTCATTTGTCAATGTTACTGGTTTCCATGTGTTGATGGGTATGTCAAGCGCACTAGACACATTATGTGGTCAAGCATATGGAGCACAGCAATATCACATGGTTGGGGTACACACCCAAGGAGCCATGTTGGTTAGCACCCTTGTTACTCTCCCTGTGTCCATTATTTGGGTATACTTAAGCCCAATTCTAGTTGTTCTTCATCAAGACAAAGCAATTGCATCACAAGCTCAGCTATATGCACGTTACTTGATTCCAAGCCTTTCTGCCAACGCTCTTTTACGGTGCATTATTAAGTTCCTTCAAACCCAAAACATAGTATTTCCTATGGTGCTAGCCACTGGTCTTACTACAATGTTACACTTCTTTCTATGTTGGGCTTTGGTTCTAAAATTTGGGCTTGGTATGAAAGGAGCTGCCATTGCAACTTGCATTTCAAATTGGTTTAATACCATACTATTGGCGCTTTATATATGGCTCTCCCCTTTATGCAAAAGAACTTGGAATGGTTTCTCAAAGGAATCATTGCATAAAATCCCTCAATTTCTCAGACTTGCTTTTCCTTCAGCACTCATGGTCTGCTTAGAAACATGGACATTTGAACTTATGGTGCTTTTGTCTGGTGCACTTCCAAATGCAAAATTGCAAACTTCAGTACTGTCTATATGCCTCAATACAGCTGGTATAGTTTGGATGATACCATTTGGAGTTAGTGCTGCTGGAAGTACAAGGATCTCAAATGAACTAGGGGCTGGCTATCCAAAAGCTGCATATTTAGCTGTCAAAGTGACCTTATTGTTGGCCTTCATAGTGGGACTACTAGAATTTGCTTCCCTAATGCTGGTATGGAAAGTTTGGGGTCGTGCTTTTACCAATGTACATGAAGTGGTTGCATATGTGACTTCCATGATGCCAATTCTTGCAAGCGCTGCCGTCATAGATTCAATTCAAACGGCATTCCAAGGTGTTGCCAGAGGATGTGGTTGGCAGAAGCTTGGTGCATATGTGAATCTTGGATCTTATTATCTCTTGGGTGTTCCTTTTGCAGTTGTGTCAGCTTTTGTCCTCCACATGAAGGGACAGGGGCTATATTTGGGGATTGTATTAGCACTTATTGTGCAAGTGGTGTGTTTTCTTTTGGTTACCTTACGCACCAATTGGGAGAAAGAAGCAAATAAGGCAGCAAAAAGAGTAGGAGGCAATGGAGTCCAAGTTGAGGCACTTCCGGGTGACTAA 1398 0.4177 MGIWKKEIVEEAKKQLWLAGPMICVCVFQNSLQMISVMFVGHLDELFLAGASLATSFVNVTGFHVLMGMSSALDTLCGQAYGAQQYHMVGVHTQGAMLVSTLVTLPVSIIWVYLSPILVVLHQDKAIASQAQLYARYLIPSLSANALLRCIIKFLQTQNIVFPMVLATGLTTMLHFFLCWALVLKFGLGMKGAAIATCISNWFNTILLALYIWLSPLCKRTWNGFSKESLHKIPQFLRLAFPSALMVCLETWTFELMVLLSGALPNAKLQTSVLSICLNTAGIVWMIPFGVSAAGSTRISNELGAGYPKAAYLAVKVTLLLAFIVGLLEFASLMLVWKVWGRAFTNVHEVVAYVTSMMPILASAAVIDSIQTAFQGVARGCGWQKLGAYVNLGSYYLLGVPFAVVSAFVLHMKGQGLYLGIVLALIVQVVCFLLVTLRTNWEKEANKAAKRVGGNGVQVEALPGD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1012 465 CDD MATE_eukaryotic 11 447 IPR045069 GO:0042910|GO:1990961
Apr6g1012 465 TIGRFAM matE: MATE efflux family protein 21 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr6g1012 465 PANTHER PROTEIN DETOXIFICATION 2 452 - -
Apr6g1012 465 Pfam MatE 21 180 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr6g1012 465 Pfam MatE 242 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr6g1012 465 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1012 Apr-Chr6 14823282 14827154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1012 K03327 - gmx:100793135 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1012 6 14823282 14827154 Apr2g1546 2 21352480 21355133 PCT