Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1014 ATGGGCATATGGGAAAAGGGAATTGCAGAAGAAGCAAAGAAGCAACTATGGCTAGCAGGGCCAATGGTATTTGTGTGTGTGTTTCAGTACAGTTTACAAGTGATATCTCTCATGTTTGTGGGCCATTTGGATGAGTTGCTTCTGGCTGGTGCTTCTCTAGCTGCTTCATTTGTAAATGTCACTGGTTTCAGTGTATTGATAGGTATGTCTTGTGCATTGGACACATTTTGTGGTCAATCATATGGAGCGCAGGAATACCATATGGTTGGCATACACATGCAGAGAGCCATAGTGGTAATCATGCTTGTTACTATACCTTTGACCATTATTTGGGCATTCTTGAAGCCAATTCTAGTTGTTCTTCATCAAGACAAAACAATTGCAGCACAAGCTCAACTGTATGCACGTTACTTGATTCCAAGTCTTTCTGCCAATGCTCTTCTTCGGTGCATTGTTAAGTTCCTTCAAACACAATACATTGTGTTTCCTATGGTGCTAGCCACTGGATTCACTACCTTAATACATGTACTTTTATCTTGGCTTTTGGTTCTAAAATTTGAGCTTGGTATCAAAGGAGCTGCCATTGCATTTTGCATTTCAAATTGGATTAACACAGTACTACTAGCACTTTACATCAAATTCTCCTCTTCCTGCAAAAGCACTTGGACTGGTTTCTCAAGGGAGTGCTTCCATAACATCCCTCAATTTCTCAGGCTTGCTTTTCCTTCAACACTCATGGTCTGCCTAGAGATGTGGACTTTTGAACTAATGGTGCTCTTATCCGGTGCTCTTCCTAATCCAAAATTGCAAACTTCAGTGCTTTCTATATGCTTTAATACAGCTGGTATGTTTTGGATGATACCCTTTGGAGTTAGTGCTGCTGTAAGCACAAGGATCTCAAATGAACTAGGGGCTGGCCGTCCAAAAGATGCATATTTAGCTGTTAAAGTCACCTTATTAGTATCCTTGATTGTTGGAGCTTTAGAATTTACTCTCCTTATGCTAACAAGGAACATTTGGGGCCGTATTTTTACCAATGTACCTGAAGTATTCCATTATATGGCATCTATGACGCCAATTCTTGCCAGCTCTGTCTTTGTAGATTCAATTCAAACAGCATGCTCAGGTATTGCCAGAGGATGTGGTTGGCAGAAGCTTGGTGCATATGTCAATCTTGGATCCTATTATCTTGTAGGAGTTCCTTTTGCAATTGTGTTAGCTTTTGTCCTCCATATGAATGGAAAGGGACTCCTTTTAGGGATTGTACTTGCACTTACTATGCAAGGGGTGTGTTTCCTTCTAGTCACCTTACGCACCAATTGGGAGAAAGAAGCAAATAAAGCAGCAATAAGAGTAAGAGGCAAAAGGGTACAAGCTGATGCACATTCACTGCAAAGCGAACAAAATGCAACTCCTAGTAGTTGA 1425 0.4084 MGIWEKGIAEEAKKQLWLAGPMVFVCVFQYSLQVISLMFVGHLDELLLAGASLAASFVNVTGFSVLIGMSCALDTFCGQSYGAQEYHMVGIHMQRAIVVIMLVTIPLTIIWAFLKPILVVLHQDKTIAAQAQLYARYLIPSLSANALLRCIVKFLQTQYIVFPMVLATGFTTLIHVLLSWLLVLKFELGIKGAAIAFCISNWINTVLLALYIKFSSSCKSTWTGFSRECFHNIPQFLRLAFPSTLMVCLEMWTFELMVLLSGALPNPKLQTSVLSICFNTAGMFWMIPFGVSAAVSTRISNELGAGRPKDAYLAVKVTLLVSLIVGALEFTLLMLTRNIWGRIFTNVPEVFHYMASMTPILASSVFVDSIQTACSGIARGCGWQKLGAYVNLGSYYLVGVPFAIVLAFVLHMNGKGLLLGIVLALTMQGVCFLLVTLRTNWEKEANKAAIRVRGKRVQADAHSLQSEQNATPSS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1014 474 TIGRFAM matE: MATE efflux family protein 21 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr6g1014 474 CDD MATE_eukaryotic 11 447 IPR045069 GO:0042910|GO:1990961
Apr6g1014 474 PANTHER PROTEIN DETOXIFICATION 1 452 - -
Apr6g1014 474 Pfam MatE 242 404 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr6g1014 474 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Apr6g1014 474 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1014 Apr-Chr6 14837589 14842365 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1014 K03327 - gmx:100813142 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1014 6 14837589 14842365 Apr2g1547 2 21360148 21364233 ECH
Apr6g1014 6 14837589 14842365 Apr6g1014 6 14837589 14842365 ECH
Apr2g1546 2 21352480 21355133 Apr6g1014 6 14837589 14842365 PCT