Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3419 ATGATTAGCACTCCAACAGTGCTAGTCGTGCCATATCCAGCTCAAGGGCATGTAAACCCCATGATGAGCCTTTCACATAAGCTGGTTGAGCATGGATGCAATATCATCTTTGTCAACTCAGACTTCAACCATAAGAGAGTAGTCAGATCCATGGAGAACAACAATGGATCACCTTCACCAATCAAATTGGTGTCAATCCCAGATGGGTTGGGACCTGACCATGACAGAGTCCATCTAGGAGAGTTATGTGATTCCGTATTGAGGACCATGCCTTCAGAGCTTGAGAAGCTCATAGAAGATCTTCAATTGAATGAGGGCATTAAAGTAACTTGCATTGTTGCAGATGTGATTATGGGTTGGGCATTGGAAGTTGCACGCAAAGTGGGAATCAAAGGTGCATTATTTTGGCCTGCGGCAGCATCTATGTTTGTGTTGCAGTATAACGCTCCCAAACTTATTGCTGATGGCATCTTAGACTCTGATGGATTTGAGATCTCAAAAAAACCATTATGGTTATCCTCTTACATTCCTGGTATGGACATCGGATCTAGTTGGTGGCGAAATCTCTTTGATCCGTCAGTTGAAAAGAGAATGTTTAAATATGTGGTGCACTGCATGCGTCATTCAAATTTGACAGAGTGGTATCTCTGTAACAGCATTCAAGAACTTGAACCTGAAGCATTTTCCTTAGTACCAAAGCTATTATCGCCAATAGGCCCATTATTGACAAGGGCAACTACAAAATCATCTGGACAATTCTGGAAAGAAGATATATCTTGCATGAGTTGGCTAGATCAACAACCTCATTGTTCTGTAGTTTATGTTGCCTTTGGTAGTCACACACTACTTGACCAAAGACAATTCACAGAACTTGCACTTGGACTTGAACTCACCAATAGACCTTTTCTTTGGGTTGTGCGTCAAGATCCTAATTGCACCAATAAAATGTGTCTCCCTCTTGAATTCAAGGGTTATAGAGGTAAAATAACTGGATGGGCTCCTCAAAAGAAGGTGCTAAGTCACCCTGCTATAGCTTGTTTTGTAAGTCATTGCGGTTGGAATTCGACCATAGAGGCTTTGTCTAATGGAGTGCCTCTCCTGTGTTGGCCGTATTTCGCAGACCAACTTTTCAACAAGAATTATGTTTGTGATACATTGAAGGTTGGGATGGCATTTGATTCGGATGAAAAGGGATTAGTGTCACGTAAAGAGATAAAGGCAAAAGTGGATCAGTTGCTTAGTAATGAGAATACGAGATCAAGGTCTCATAAGCTGATGGAGAAGCTAAAGCAGAATATGGAAGAAGGAAGTACTTCTTCAAAGAACTTAAGCAGGTTTCTGACTTGGTTGAAAGGATAA 1359 0.4135 MISTPTVLVVPYPAQGHVNPMMSLSHKLVEHGCNIIFVNSDFNHKRVVRSMENNNGSPSPIKLVSIPDGLGPDHDRVHLGELCDSVLRTMPSELEKLIEDLQLNEGIKVTCIVADVIMGWALEVARKVGIKGALFWPAAASMFVLQYNAPKLIADGILDSDGFEISKKPLWLSSYIPGMDIGSSWWRNLFDPSVEKRMFKYVVHCMRHSNLTEWYLCNSIQELEPEAFSLVPKLLSPIGPLLTRATTKSSGQFWKEDISCMSWLDQQPHCSVVYVAFGSHTLLDQRQFTELALGLELTNRPFLWVVRQDPNCTNKMCLPLEFKGYRGKITGWAPQKKVLSHPAIACFVSHCGWNSTIEALSNGVPLLCWPYFADQLFNKNYVCDTLKVGMAFDSDEKGLVSRKEIKAKVDQLLSNENTRSRSHKLMEKLKQNMEEGSTSSKNLSRFLTWLKG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3419 452 CDD GT1_Gtf-like 7 442 IPR002213 GO:0008194
Amo20g3419 452 ProSitePatterns UDP-glycosyltransferases signature. 332 375 IPR035595 -
Amo20g3419 452 Gene3D Glycogen Phosphorylase B; 9 443 - -
Amo20g3419 452 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 264 416 IPR002213 GO:0008194
Amo20g3419 452 PANTHER EG:EG0003.4 PROTEIN-RELATED 4 451 - -
Amo20g3419 452 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1 4 451 - -
Amo20g3419 452 Gene3D Glycogen Phosphorylase B; 248 431 - -
Amo20g3419 452 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 3 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3419 Amo-Chr20 143555533 143557794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3419 2 451 Glycosyltransferase AT3G02100 41.991 6.27e-124 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3419 - - ahf:114927331 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3419 20 143555533 143557794 Amo10g2844 10 93455397 93459241 hybridization
Amo20g3419 20 143555533 143557794 Amo14g3780 14 143101236 143103908 PCT
Amo14g3773 14 142855657 142860139 Amo20g3419 20 143555533 143557794 PCT