Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2844 ATGATTAGCACTCCAACAGTGCTAGTCGTGCCATTTCCAGCTCAAGGCCATGTAAACCCCATGATGAGCCTTTCACATAAGCTGCTTGACCATGGATGCAATATCATCTTTGTCAACTCAGACTTCAACCATAAGAGAGTGGTGAGATCCATGGACAACAATAATGGATCATCTTCACCAATCAAATTGGTGTCAATCCCAGATGGGTTGGGACCTGACCATGACAGAGTCCATGTAGGAGAGTTATGTGACTCCATATTGACCATGCCTTCAGAGCTTGAGAAGCTCATAGAAGATCTTCAATTGAATGAGGGCATTAAAGTAACTTGCATTGTTGCTGATGTGTGTATGGGTTGGGCATTGGAAATTGCACGAAAAGTGGGAATCAAAGGTGCATTCTTTTGGTCTGCGGCAGCATCTACGTTTGTGTTGCAGTATAACGCTCCCAAGCTTATTGCTGATGGCATCTTAGACTCTGATGGATTTCAGATTTCAAAAAAATCATTATGGTTATCCTCTTGCATTCCTGGTATGGACATCAGATCTAGTTGGTGGCGAAATCTCTTTGATCCGTCAGTTGAAAAGAGAATGTTTAAATATGTGGTGCGCTGCATGCGTGATTCAAATTTGACAGAGTGGTATCTCTGTAACAGCATTCAAGAACTTGAACCTGAAGCATTTTCCTTAGTACCAAAACTATTATCTCCAATAGGTCCATTGTTGACAAGGGCAACTACAAAATCATCTGGACAATTCTGGAAAGAAGATGTATCTTGCATGAGTTGGCTAGATCAACAACCTCATTGTTCTGTAGTTTATGTTGCATTTGGTAGTCACACTCTATTTGATCAAAGACAATTCACAGAACTTGCACTTGGACTTGAACTCACCAATAGACCTTTTCTTTGGGTTGTGCGTCAAGATCCTAATTGCAGCAATAAAATGTGTCTCCCTCTTGAATTCAAGGGTTATAGAGGCAAAATAATTGGATGGGCTCCTCAAAAAAAGGTGCTAAATCACCCTGCTATAGCTTGTTTTGTAAGTCATTGCGGTTGGAATTCGATTATAGAGGGTTTGTCTAATGGAGTGCCTCTCCTGTGTTGGCCGTATTTCGCAGACCAACTTTTCAATAAGAATTATGTTTGTGATGCATTGAAGGTTGGGATGGGATTTGATTCGGATGAAAAGGGATTAGTGTCACGTAAAGAGATAAAGGCAAAAGTGGATGAGTTGCTTAGTAATGAGAATACAAGATCAAGGTCTCATAAGCTGATGGAGAAGCTAAAGCACAATATGGAAGAAGGAAGTACTTCTTCAAAGAACTTAAACAGGTTTCTTACTTGGTTGAAAGGATAA 1356 0.4041 MISTPTVLVVPFPAQGHVNPMMSLSHKLLDHGCNIIFVNSDFNHKRVVRSMDNNNGSSSPIKLVSIPDGLGPDHDRVHVGELCDSILTMPSELEKLIEDLQLNEGIKVTCIVADVCMGWALEIARKVGIKGAFFWSAAASTFVLQYNAPKLIADGILDSDGFQISKKSLWLSSCIPGMDIRSSWWRNLFDPSVEKRMFKYVVRCMRDSNLTEWYLCNSIQELEPEAFSLVPKLLSPIGPLLTRATTKSSGQFWKEDVSCMSWLDQQPHCSVVYVAFGSHTLFDQRQFTELALGLELTNRPFLWVVRQDPNCSNKMCLPLEFKGYRGKIIGWAPQKKVLNHPAIACFVSHCGWNSIIEGLSNGVPLLCWPYFADQLFNKNYVCDALKVGMGFDSDEKGLVSRKEIKAKVDELLSNENTRSRSHKLMEKLKHNMEEGSTSSKNLNRFLTWLKG* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2844 451 PANTHER UDP-GLUCOSYLTRANSFERASE FAMILY PROTEIN 2 450 - -
Amo10g2844 451 CDD GT1_Gtf-like 7 441 IPR002213 GO:0008194
Amo10g2844 451 ProSitePatterns UDP-glycosyltransferases signature. 331 374 IPR035595 -
Amo10g2844 451 PANTHER EG:EG0003.4 PROTEIN-RELATED 2 450 - -
Amo10g2844 451 Gene3D Glycogen Phosphorylase B; 9 442 - -
Amo10g2844 451 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 3 448 - -
Amo10g2844 451 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 264 415 IPR002213 GO:0008194
Amo10g2844 451 Gene3D Glycogen Phosphorylase B; 247 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2844 Amo-Chr10 93455397 93459241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2844 2 450 Glycosyltransferase AT3G02100 41.342 1.48e-121 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2844 - - ahf:114927331 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3419 20 143555533 143557794 Amo10g2844 10 93455397 93459241 hybridization
Amo10g2844 10 93455397 93459241 Amo14g3780 14 143101236 143103908 PCT
Amo14g3773 14 142855657 142860139 Amo10g2844 10 93455397 93459241 PCT