Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1341 ATGGAGTATCCTACTATTCTCATCTTTCTGTTAGCCATGTTTGTTCTCTTAACGTCCGCATTTTCCTCAGCAAATGCCAAAATTTGTGAGCACGAGTTTGTTGTTGAAGCAACACCAGTGAAGAGGCTGTGCAAAACTCACAATAGAATAACTGTGAATGGACAATATCCTGGCCCTACTTTGGAAGTCAACAATGGAGACACTTTGGTCGTCAAAGTCACTAACAAAGCTCGCTATAATGTCACCATTCACTGGCACGGTGTTAGGCAAATGAGAACAGGGTGGGCAGATGGACCAGAATTTGTGACACAGTGTCCTATTAGACCTGGAGAGAGTTACACATACAGGTTCACAATTCAAGGACAAGAAGGTACTCTTTGGTGGCATGCTCATAGCTCATGGCTAAGGGCCACTGTTTATGGAGCTTTAATCATTCGTCCTATACAAGGACACCCCTACCCTTTCCCTAAGCCTCACCGAGAAACACCCATTCTTCTAGGGGAATGGTGGGATGCAAACCCTATCGATGTGGTGAGGCAGGCCACAAGAACAGGAGCAGCTCCTAATGTCTCTGATGCCTACACTATTAATGGTCAACCTGGTGATCTCTATAAGTGCTCTACCAAAGGGACTAGCATTGTTACAATTGATTCCGGCGAGACCAACCTCCTCCGTGTGGTAAACGCAGCACTCAACCAACCACTGTTTTTCACCGTCGCCAACCACAAGCTGACGGTGGTTGGCGCCGATGCCTCTTACCTCAGGCCATTCACCACCAAAGTCCTTATGCTGGGCCCGGGCCAAACCACCGACGTCTTGATCACCGGCGACCAGCCAGCTTCCCGGTACTACATGGCGGCGCGTGCCTACCAATCAGCACAAAACGCTGCTTTTGACAACACCACCACAACCGCCATACTCCAATACAGGAAAAGTTCTGTTATGAAACCAATCATGCCATCACTTCCTGCTTACAATGACACAAATACAGTTACTGCATTCAGCAGAAGCTTCTTCAGCCTAAGAAAAGTTGAGGTTCCTACTCAGATTGACGACAATTTGTTTTTCACCGTTGGCTTGGGACTCAACAGGAAAAATCGATGCCAAGGACCAAACGGGACAAGGTTCACTGCAAGCATAAACAATGTCTCATTTGTTCTCCCAAACAAGATTTCCATCCTTCAAGCACACCAACTTGGAATTCCGGGAGTGTTCACCACTGATTTTCCGGCACAGCCAGCCGTGAAATTCGACTACACGGGCAATGTTAGCCGTTCGTTGTGGCAGCCGATTCGAGGGACTAAGGCTTACAAGCTAAAGTATGGGTCAAGAGTGCAGATTGTAATTCAGGACACTAGCATTGTGACCCCTGAGAACCACCCTATTCATCTTCATGGCTATGATTTCTACATTGTTGCTCAAGGTTTTGGAAATTTTGATGCCAAGAAAGATACATCAAAGTTCAACCTTGTTGATCCACCTTTGAGGAACACTGTGGCTGTGCCTGTGAATGGATGGGCAGTTATTCGGTTTGTTGCTGATAATCCAGGTGCCTGGCTTATGCATTGTCACTTGGATGTTCACATTACATGGGGTTTGGCCACAATCCTCTTAGTAGAGAATGGAAATGGAGAATTGCAATCCATAGAGCCCCCTCCATTGGATCTGCCTCTCTGTTAG 1680 0.4685 MEYPTILIFLLAMFVLLTSAFSSANAKICEHEFVVEATPVKRLCKTHNRITVNGQYPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIRPIQGHPYPFPKPHRETPILLGEWWDANPIDVVRQATRTGAAPNVSDAYTINGQPGDLYKCSTKGTSIVTIDSGETNLLRVVNAALNQPLFFTVANHKLTVVGADASYLRPFTTKVLMLGPGQTTDVLITGDQPASRYYMAARAYQSAQNAAFDNTTTTAILQYRKSSVMKPIMPSLPAYNDTNTVTAFSRSFFSLRKVEVPTQIDDNLFFTVGLGLNRKNRCQGPNGTRFTASINNVSFVLPNKISILQAHQLGIPGVFTTDFPAQPAVKFDYTGNVSRSLWQPIRGTKAYKLKYGSRVQIVIQDTSIVTPENHPIHLHGYDFYIVAQGFGNFDAKKDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGAWLMHCHLDVHITWGLATILLVENGNGELQSIEPPPLDLPLC* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1341 559 Pfam Multicopper oxidase 409 541 IPR011706 GO:0005507|GO:0016491
Amo20g1341 559 SUPERFAMILY Cupredoxins 347 559 IPR008972 -
Amo20g1341 559 Gene3D - 364 559 IPR008972 -
Amo20g1341 559 ProSitePatterns Multicopper oxidases signature 2. 522 533 IPR002355 GO:0005507
Amo20g1341 559 CDD CuRO_1_LCC_plant 31 147 IPR034288 GO:0005507
Amo20g1341 559 SUPERFAMILY Cupredoxins 24 180 IPR008972 -
Amo20g1341 559 CDD CuRO_3_LCC_plant 404 542 IPR034289 GO:0005507
Amo20g1341 559 PANTHER LACCASE 7 559 - -
Amo20g1341 559 TIGRFAM laccase: laccase 26 559 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo20g1341 559 ProSitePatterns Multicopper oxidases signature 1. 517 537 IPR033138 -
Amo20g1341 559 PANTHER MULTI-COPPER OXIDASE 7 559 IPR045087 -
Amo20g1341 559 CDD CuRO_2_LCC_plant 163 309 IPR034285 -
Amo20g1341 559 Gene3D - 159 343 IPR008972 -
Amo20g1341 559 Gene3D - 16 147 IPR008972 -
Amo20g1341 559 SUPERFAMILY Cupredoxins 155 341 IPR008972 -
Amo20g1341 559 Pfam Multicopper oxidase 35 147 IPR011707 GO:0005507
Amo20g1341 559 Pfam Multicopper oxidase 161 311 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1341 Amo-Chr20 28661657 28666405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1341 K05909 - gmx:100808948 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0818 17 19364733 19368797 Amo20g1341 20 28661657 28666405 ECH
Amo20g1341 20 28661657 28666405 Amo20g1341 20 28661657 28666405 ECH
Amo20g1341 20 28661657 28666405 Amo17g0218 17 3135629 3138438 PCT
Amo20g1341 20 28661657 28666405 Amo07g0508 07 5756833 5758942 PCT
Amo17g0218 17 3135629 3138438 Amo20g1341 20 28661657 28666405 PCT
Amo07g0508 07 5756833 5758942 Amo20g1341 20 28661657 28666405 PCT