Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0508 ATGAGTGGAGTAGAGAAAGAAAAAGAGAAGGAGAAAGGATCATCAGGAACCACTAAAACCCCTGCCGATTTCCTCAAATCCATTCGCGGCCGCCCCGTTGTCGTTAAGCTCAATTCCGGCGTTGATTATCGTGGTATCTTGGCTTGTCTAGATGGCTATATGAATATTGCAATGGAACAGACAGAGGAGTATGTCAATGGCCAACTGAAGAACAAATATGGCGACGCCTTCATTCGAGGGAATAATGTTCTGTATATTAGTACTTCAAAGAGGACTCTAGCAGAAGGAGCTTAG 294 0.4422 MSGVEKEKEKEKGSSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0508 97 SMART Sm3 23 88 IPR001163 -
Amo07g0508 97 SUPERFAMILY Sm-like ribonucleoproteins 20 88 IPR010920 -
Amo07g0508 97 Gene3D - 10 91 - -
Amo07g0508 97 MobiDBLite consensus disorder prediction 1 16 - -
Amo07g0508 97 CDD LSm6 20 87 - -
Amo07g0508 97 PANTHER SM-LIKE PROTEIN LSM36B-RELATED 10 97 - -
Amo07g0508 97 Pfam LSM domain 23 87 IPR001163 -
Amo07g0508 97 MobiDBLite consensus disorder prediction 1 23 - -
Amo07g0508 97 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F 10 97 IPR016487 GO:0000398
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0508 Amo-Chr7 5756833 5758942 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0508 K12625 - gmx:100797765 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0218 17 3135629 3138438 Amo07g0508 07 5756833 5758942 hybridization
Amo20g1341 20 28661657 28666405 Amo07g0508 07 5756833 5758942 PCT
Amo07g0508 07 5756833 5758942 Amo20g1341 20 28661657 28666405 PCT