Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0818 ATGGAAACCAATCAGCTACCTTGCAAGTCAAGCTTCTCTCTGCTCTTATTTTTCCTACTTACTATCATTGCTTTCCATGCTACAAATGCAGAGCATCAATACCATGAATTTGTTATCCAAAGAACACCAGTGAAGAGGCTGTGCAAGACACAAAGCATACTCACTGTAAATGGACAGTTTCCAGGCCCAGCAATTGAAGTAAAAGATGGTGATTCACTTGCAATCAAAGTAGTCAATGCTGGACCTTATAATATCTCTATCCACTGGCATGGATTGAGGATGCTGAGAAATCCATGGGCAGATGGACCAAGCTATGTGACTCAATGTCCTATCCAACCTGGGGGAAGTTACACATACCGTTTTACAATACAAAACCAAGAGGGAACCCTATGGTGGCATGCTCACACTGGCTTCCTACGAGCCACTGTTTATGGTGCTTTCATTATCCACCCGAAACAGGGTTCTTCCTATCCATTCACTCAGCCAAAGAGAGAATTTCCCATCCTCCTTGGGGAATGGTTTGATAGGGATCCTATGGCTCTCTTAAGGCAGACACAGTTAACAGGAGCTGCTCCAAATGTGTCTGTTGCTTACACCATCAACGGTCAACCCGGAGATCTCTACAGATGTTCTAGTCAAGAAACCGTGCGTGTTCCGGTAGATGTAGGCGAGACGATTCTGCTAAGAATCATCAACAGTGCCCTGAACCAAGAACTCTTCTTCTCAATAGCTAATCATAGAATGACAGTTGTCGGCACAGACGCGGCATATACGAAGCCTTTCAACACCGGAGTCATCATGATAGGACCCGGCCAGACAATCAACGTCCTCGTCACGGCCAACCAGCCTCCCGGCCGCTACTACATGGCGGCGCGCGCATACCAAACAGCCATGAACGCCGCCTTCGACAACACTACCACCACCGCCATCCTCAAATACAAATCCGCCAGCTGCAGCAGAAAAGGACCAGCACCGCGGCCAATTCTTCCCGCATTGCCAGCTTTCAACGACACCGCCACCGCCACCGCATACACGTCGGGAATCAGAGGAATGTCAAAGATTAACGTCTTCACAGACGCTGCTGATGCGAATTTGTTCTTCACAGTTGGATTAGGCCTAATTAATTGTACAAATCCTAATAGTCCCCGGTGCCAGGGACCAAACGGAACGCGATTCACAGCAAGCATTAACAATAATTCTTTTGTTCTTCCAAGGACAACCTCCTTAATGCAGGCTTACTACCAAGGAATACCCGGCGTGTTCACGACGGATTTTCCTCCTGTGCCGCCGCAGCAATTCAATTACTCCGGCAACGTTCCGCGGGGCCTGTGGACGCCTACGCCGGGAACTAGGCTCCTGAAGTTGAAGTATGGGACACGGGTGCAACTTGTGTTCCAAGATACAAATATTGTTACTACAGAGGACCACCCCATGCACATTCATGGCTTCCATTTCTTTGTGGTTGGATCTGGTTTTGGAAACTTTAACCCTTCGACGGATCCTGCAAGGTTTAACCTGGTTGATCCGCCCGTCAAGAACACCATTGGAACGCCTCCTGGAGGATGGGTGGCCATTCGATTCGTCGCCGATAATCCAGGAATTTGGTTCTTGCACTGTCACATAGACTCACATCTGAATTGGGGACTGGCAACTGCACTTTTGGTAGAGAATGGAGTTGGCCCATCACAATCAGTGATTCCACCACCACCTGATCTACCTCAATGTTAA 1728 0.4838 METNQLPCKSSFSLLLFFLLTIIAFHATNAEHQYHEFVIQRTPVKRLCKTQSILTVNGQFPGPAIEVKDGDSLAIKVVNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGAFIIHPKQGSSYPFTQPKREFPILLGEWFDRDPMALLRQTQLTGAAPNVSVAYTINGQPGDLYRCSSQETVRVPVDVGETILLRIINSALNQELFFSIANHRMTVVGTDAAYTKPFNTGVIMIGPGQTINVLVTANQPPGRYYMAARAYQTAMNAAFDNTTTTAILKYKSASCSRKGPAPRPILPALPAFNDTATATAYTSGIRGMSKINVFTDAADANLFFTVGLGLINCTNPNSPRCQGPNGTRFTASINNNSFVLPRTTSLMQAYYQGIPGVFTTDFPPVPPQQFNYSGNVPRGLWTPTPGTRLLKLKYGTRVQLVFQDTNIVTTEDHPMHIHGFHFFVVGSGFGNFNPSTDPARFNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVGPSQSVIPPPPDLPQC* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0818 575 SUPERFAMILY Cupredoxins 159 351 IPR008972 -
Amo17g0818 575 PANTHER LACCASE-13 9 575 - -
Amo17g0818 575 CDD CuRO_2_LCC_plant 166 313 IPR034285 -
Amo17g0818 575 CDD CuRO_1_LCC_plant 35 151 IPR034288 GO:0005507
Amo17g0818 575 CDD CuRO_3_LCC_plant 420 558 IPR034289 GO:0005507
Amo17g0818 575 Pfam Multicopper oxidase 425 557 IPR011706 GO:0005507|GO:0016491
Amo17g0818 575 PANTHER MULTI-COPPER OXIDASE 9 575 IPR045087 -
Amo17g0818 575 Gene3D - 33 163 IPR008972 -
Amo17g0818 575 Pfam Multicopper oxidase 165 315 IPR001117 -
Amo17g0818 575 Gene3D - 382 575 IPR008972 -
Amo17g0818 575 SUPERFAMILY Cupredoxins 362 575 IPR008972 -
Amo17g0818 575 Gene3D - 164 353 IPR008972 -
Amo17g0818 575 SUPERFAMILY Cupredoxins 34 178 IPR008972 -
Amo17g0818 575 ProSitePatterns Multicopper oxidases signature 2. 538 549 IPR002355 GO:0005507
Amo17g0818 575 TIGRFAM laccase: laccase 31 575 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo17g0818 575 Pfam Multicopper oxidase 39 153 IPR011707 GO:0005507
Amo17g0818 575 ProSitePatterns Multicopper oxidases signature 1. 533 553 IPR033138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0818 Amo-Chr17 19364733 19368797 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0818 K05909 - gmx:100786719 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0818 17 19364733 19368797 Amo20g1341 20 28661657 28666405 ECH
Amo17g0818 17 19364733 19368797 Amo17g0818 17 19364733 19368797 ECH
Amo17g0818 17 19364733 19368797 Amo07g1032 07 19207942 19212073 hybridization
Amo01g0546 01 8048633 8051108 Amo17g0818 17 19364733 19368797 PCT
Amo17g0818 17 19364733 19368797 Amo01g0546 01 8048633 8051108 PCT