Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0218 ATGGAAGCTCTCAAGAACTTTGGAAAATGCCCCATTATTTTCCTAGCTGTTTTTGCTCTCTTAGCTTCAACATTATTGTCCTTGGCAAATGCTAAAGTTCATGAGCATGAGTTTGTCATTCAAGCAACTCCAGTGAAGAGGCTGTGCAATACTCGCAGCGCTATTACAGTGAATGGGCAATTACCTGGACCAACCTTGGAAGTCAACAATGGAGACACTCTCATTGTTAAAGTCATTAACAAAGCTCGTTACAATGTCACCATTCACTGGCATGGTGTTAGACAAATCAGAACAGGGTGGTCAGATGGACCAGAATTTGTGACACAATGTCCAATTCGTCCCGGAGACAGTTACACTTACAGGTTCACCATCCAAGGACAAGAGGGTACACTTTGGTGGCATGCTCATAGTTCATGGCTAAGGGCCACCGTCTATGGCGCTTTAATCATTCGTCCTAGGGAAGGACAGGGCTACCCTTTCCCAAAACCCAAGCGCGAGACACCTATTATTCTAGGGGAATGGTGGGATGCAAACCCAATCGATGTTTTGAGACAGGCCCAACAAACAGGGGCAGCACCCAACATATCTGATGCATACACCATCAATGGTCAACCTGGTGATCTTTACAAATGCTCTACCAAAGAAACCACAATTGTTCCAATAGATTCCGGCGAGACAAACCTCCTCCGCGTGATTAACGGCGGACTGAACCAACCGCTGTTCTTCTCGGTGGCGAACCACAAGCTTATAGTGGTGGGTGCAGACGCATCGTACCTGAAACCCTTCACGACTTCAGTTATAATGCTGGGTCCAGGTCAAACCACGGACGTTCTAATAACCGGAGACCAACCTCCTTCTCGCTACTACATGGCCGCACGCGCTTATCAATCTGCACAAAATGCACCGTTCGACAACACCACCACAACCGCAATCCTCGCCTACAAATCTGCACCGTGCCCCGCCAAAGGAACACTTGCACCGAAACCCCTCATGCCTCTTCTCCCTGCATACAACGACACCAACACCGTAACCGCTTTCAGCAGAAGCTTCAGAAGCCCAAGAAGAGTGGATGTTCCCGCCGAGATCGATGAGAATCTCTTCTTCACCATCGGTCTTGGCCTCAACAATTGCCCTCCCAACTTCAGCAAGAATCAGTGTCAGGGACCGAACGGAACAAGATTCACTGCCAGCATGAACAACGTATCCTTCGTTCTTCCCAACAGCATCTCGATCCTTCAAGCTCACCATCTCGGTGTTCCTGGCGTGTTCACCACTGATTTTCCGGTGCAGCCTCCGGCGAAGTTTGATTACACCGGGAATGTGAGTCGTTCGTTGTGGCAGCCTGTTGCGGGGACTAAGGTGGCCAAGTTAAGGTACGGTTCGAGGGTGCAGATTGTGTTGCAGGATACTAGCATTGTTACCCCTGAGAATCATCCAATTCATCTTCATGGATATGATTTCTACATTGTTGCTGAAGGGTTTGGGAACTTTGATCCTAAGAAAGATTCTTCTAAGTTTAATCTTGTTGATCCTCCTATGAGGAACACTGTCGCCGTGCCTGTTAATGGTTGGGCAGTTATCAGATTTGTTGCTGATAATCCAGGTGCTTGGATTATGCACTGTCATTTGGATGTTCACATCGGATGGGGTTTGGCGACGGTGCTCTTGGTGGATAACGGCGAAGGCTTATTGGAATCCATAGAGCCACCACCGGAGGACTTGCCTCTATGCTAG 1734 0.4844 MEALKNFGKCPIIFLAVFALLASTLLSLANAKVHEHEFVIQATPVKRLCNTRSAITVNGQLPGPTLEVNNGDTLIVKVINKARYNVTIHWHGVRQIRTGWSDGPEFVTQCPIRPGDSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIRPREGQGYPFPKPKRETPIILGEWWDANPIDVLRQAQQTGAAPNISDAYTINGQPGDLYKCSTKETTIVPIDSGETNLLRVINGGLNQPLFFSVANHKLIVVGADASYLKPFTTSVIMLGPGQTTDVLITGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILAYKSAPCPAKGTLAPKPLMPLLPAYNDTNTVTAFSRSFRSPRRVDVPAEIDENLFFTIGLGLNNCPPNFSKNQCQGPNGTRFTASMNNVSFVLPNSISILQAHHLGVPGVFTTDFPVQPPAKFDYTGNVSRSLWQPVAGTKVAKLRYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDSSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGAWIMHCHLDVHIGWGLATVLLVDNGEGLLESIEPPPEDLPLC* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0218 577 CDD CuRO_1_LCC_plant 36 152 IPR034288 GO:0005507
Amo17g0218 577 ProSitePatterns Multicopper oxidases signature 1. 535 555 IPR033138 -
Amo17g0218 577 Pfam Multicopper oxidase 40 154 IPR011707 GO:0005507
Amo17g0218 577 CDD CuRO_2_LCC_plant 168 314 IPR034285 -
Amo17g0218 577 PANTHER MULTI-COPPER OXIDASE 10 577 IPR045087 -
Amo17g0218 577 Gene3D - 380 577 IPR008972 -
Amo17g0218 577 Gene3D - 19 152 IPR008972 -
Amo17g0218 577 ProSitePatterns Multicopper oxidases signature 2. 540 551 IPR002355 GO:0005507
Amo17g0218 577 SUPERFAMILY Cupredoxins 358 577 IPR008972 -
Amo17g0218 577 Pfam Multicopper oxidase 166 316 IPR001117 -
Amo17g0218 577 PANTHER LACCASE 10 577 - -
Amo17g0218 577 CDD CuRO_3_LCC_plant 422 560 IPR034289 GO:0005507
Amo17g0218 577 SUPERFAMILY Cupredoxins 160 353 IPR008972 -
Amo17g0218 577 TIGRFAM laccase: laccase 31 577 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo17g0218 577 Gene3D - 163 355 IPR008972 -
Amo17g0218 577 Pfam Multicopper oxidase 427 560 IPR011706 GO:0005507|GO:0016491
Amo17g0218 577 SUPERFAMILY Cupredoxins 28 179 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0218 Amo-Chr17 3135629 3138438 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0218 K05909 - gmx:100797749 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0218 17 3135629 3138438 Amo07g0508 07 5756833 5758942 hybridization
Amo20g1341 20 28661657 28666405 Amo17g0218 17 3135629 3138438 PCT
Amo17g0218 17 3135629 3138438 Amo20g1341 20 28661657 28666405 PCT