Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1310 ATGGTTTTAGTTGATAATAACGGGATTGGGAATACCGGGAATGATGAAACTGCGGAATCTAGTAGGAGTAAAATGGAGTTTGCTTCAGTTGATCTTGCAACTTCACAACAGACAATTCTGAACAGTGAAAATCCTCAGGGAAAGTTCGAAGGCACTGTCTCTAGTTCCCTTTCATGCTGGATCAAGTCCCTAAAATTTGGTTCTGCATCTGCCAAATTAAAACGGCTCACTTCCGACAGAGATCAGATTTCACAATCTGTACCTGCTCCTAGTTCTCATGGCATGAGATCACGATTCAGTAACATGTTTGGTCAGAAACTCGGTTGGGGTTCCGTCAAGAAGGTGTGCATGGAATGGATTAAAAATCCAATGAATATGGCCCTTTTCTTTTGGATAGCCTGTGTTGCTGTCTCGGGTGCAATTCTGTTCCTTGTGATGACAGGCATGTTGAATAATGTGTTGACAAGAAAATCTCAGAGAAATGCATGGTTTGAAGTAAACAATCAAATACTCAATGCACTTTTTACGCTTATGTGTTTGTACCAACATCCGAAGCGGTTCTACCACCTTTTTCTTTTGTGTAGATGGAGGCCGAACGACATCTCTAGGTTGCGAAAGATATACTGCAAAAATGGGACTTATAAGCCGAATGAGTGGGTGCACATGATGGTAGTGGTCATTCTCCTTCATGTGAATTGTCTTTCTCAATATGCACTCTGTGGTCTAAACTTGGGGTATAAAAGGTCTGAGAGGCCTGTCATAGGAGTTGGAATATGTGTATCTTTTTCAATTGCTACGCCAGCAATTGCAGGTTTGTACATCATTCTTAGCCCACTTGGGAAGGACTATGATTGCGAGATTGATGAAGAAGCACAGATTCAAACTACATTTTCTCAAAGGCAAGAGCAATTGAGAGAGAACGCACACGAGAAAATATATTCATTTGCATCCAAGGATCAAGAAAAGATTATTGAAGATAGACCAAAGTGGAATGGAGGAATTTTTGACATTTGGGACGATATTTCTCTGGCATATCTCTCACTTTTTTGCACTTTCTGTGTCTTTGGGTGGAATATGGAGAGACTTGGATTCGGAAACATGTATGTTCATATTGCCACTTTTATTCTGTTTTGCATTGCACCTTTCTGGATTTTCACATTGGCTGCTGTTAATATTGATGATGATAAAGTTAGACAAGGTCTTGTGGCCATTGGAATCATCCTTTGTTTTTTGGGTTTACTGTATGGTGGATTTTGGAGGATCCGAATGAGAAAGAGGTTCAATTTGCCTGCCTATAAATTCTGTTTTGGTAAACCTTCAGTTTCCGATTGCACTCTTTGGTTTTGTTGTTGGTGGTGCACCCTAGCCCAAGAATTGCGAACTGCAAATAGCTATGATCTTGTTGTAGACGATGAATTCTGCAGGAAAGAAGTTGATACCGACCAACCATCGGCAATTTTGCCCTTGGTTTGTGAAGATGTAGCATCAACCAAATCCGGCACGAGTTCTCCTAAGGGTAACAACTCTTCTCATCTTATGATAGAAACATCTAGACCTCTTAGTTCAAATAACGCCTCAAATGAATATTACAGTTCGAGTAGGTCTCTATCCCTTGTAGAAAATGTAATAATGAATCCACCAACTCAATCAATAATTGAAAGGGAAGCTCCTTAG 1674 0.4026 MVLVDNNGIGNTGNDETAESSRSKMEFASVDLATSQQTILNSENPQGKFEGTVSSSLSCWIKSLKFGSASAKLKRLTSDRDQISQSVPAPSSHGMRSRFSNMFGQKLGWGSVKKVCMEWIKNPMNMALFFWIACVAVSGAILFLVMTGMLNNVLTRKSQRNAWFEVNNQILNALFTLMCLYQHPKRFYHLFLLCRWRPNDISRLRKIYCKNGTYKPNEWVHMMVVVILLHVNCLSQYALCGLNLGYKRSERPVIGVGICVSFSIATPAIAGLYIILSPLGKDYDCEIDEEAQIQTTFSQRQEQLRENAHEKIYSFASKDQEKIIEDRPKWNGGIFDIWDDISLAYLSLFCTFCVFGWNMERLGFGNMYVHIATFILFCIAPFWIFTLAAVNIDDDKVRQGLVAIGIILCFLGLLYGGFWRIRMRKRFNLPAYKFCFGKPSVSDCTLWFCCWWCTLAQELRTANSYDLVVDDEFCRKEVDTDQPSAILPLVCEDVASTKSGTSSPKGNNSSHLMIETSRPLSSNNASNEYYSSSRSLSLVENVIMNPPTQSIIEREAP* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1310 557 Pfam PLAC8 family 330 460 IPR006461 -
Amo20g1310 557 MobiDBLite consensus disorder prediction 7 22 - -
Amo20g1310 557 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 329 463 IPR006461 -
Amo20g1310 557 MobiDBLite consensus disorder prediction 1 22 - -
Amo20g1310 557 PANTHER PLAC8 FAMILY PROTEIN-RELATED 20 555 - -
Amo20g1310 557 PANTHER - 20 555 - -
Amo20g1310 557 Pfam Protein of unknown function (DUF2985) 118 196 IPR021369 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1310 Amo-Chr20 27344465 27347253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1310 - - gmx:100811964 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1127 17 30681622 30684070 Amo20g1310 20 27344465 27347253 ECH
Amo20g1310 20 27344465 27347253 Amo20g1310 20 27344465 27347253 ECH
Amo20g1310 20 27344465 27347253 Amo10g0875 10 14091738 14094417 hybridization
Amo20g1310 20 27344465 27347253 Amo17g0207 17 3018550 3021424 PCT
Amo17g0207 17 3018550 3021424 Amo20g1310 20 27344465 27347253 PCT