Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1127 ATGGGGGGTGGTTGGAGAAGAGCGTTCTGCACCCGTAACCCAGAATCCACAATTTTACATAACCAACACCGAAGCCAATCCCCAACCACCTGCGTCAGATTGAGCTTCCTCTCAGTCTCAGACACCGCAGATTCAACATCAAATCCATCTACTCCACGCTCCCCTAGCTTCAAGCTATCCCTGTTCAGAAACAGCTTCAAATTCAGAAGTAGTTGTGGAATCTGTTTGAACAGCGTGAAGACGGGGCTGGGAACGGCAATTTACACTGCGGAATGCGGTCATGCTTTTCACTTCCCCTGCATCGCCGGCCACGTCAGCAGCAACAACACGTGCCCCGTCTGCAACGCCACGTGGAAAGTCGTTCCTGCCCTCCCGCACCAAAACGACGTCGTAAGCACCAAAATATTCGAAGCGAAGAAGCAATCTGATTCGGTAAGACCATACGACGACGATGAGCCTCTCCCTTCTCCCTTCTCCGGCTGCCAAATCGCTCCAATTCCGGAGGCCGACGAAAACAACGACGACGAAGACCAAAACGACGTGTTCCAGGGATTTTTCATAAATCCATCAAAGCCTCCAATGATGACGAAGGACGCTGATTCAAGGAATGTACGGGTGAAGCTGATGCCAGAGTGTGCTGTCATAACGTCGTCACAGAGCCACGAGACTTATGCTTTGGTTCTAAGAGTCAAGGCTCCGCCACCGCCATCGTGGAGTCAGATCGGTGCATCGCCACCGGTGGATCTTGTCACGGTTGTCGACGTCGGCGCCGGCATGAGCGGCACGAAGCTTCATATGCTGAAGCGCGCGATGCGTTTGGTTATCTCATCGCTCGGCTCCGTCGACCGGCTCGCAATCGTGGCTTATTCGGATTCATCGAAACGGTTGATGCCGCTGCGGAGAATGACGGCGCAGGGACAGCGGGTGGCTCGCCGCATCGTCGACCGCCTCATCTCCGGGCGAGAAATAGCCGCCTCAGGGGGTGTAGAAGCTCTGAGGAAAGCAGCGAAGGTTCTAGAAGACCGAAGGGAAAGAAATCCGTTCGCCTCCGTTGTTCTCTTCTCAGAAACAAGTAATTGGAAGCATCAACGAGAAAGCTTCGGCTTTAGCCACGTGTCTTCCCGGTTTACCTTTATAGAAGTCCCGGTTCAATCGTTTGGGTTCGGGAAAAGAACCGGGTTCGGCTTCCAACCGGATGAGGATCATTTTGCGAAGCGCATTGAGGAATTATTCAGCGTAACGGTGCATGATTTAACAGTTCAGCTCGAAGTTTCATCGCATCATGCTGAGATCAGAGATGTTTATTCCTGTAATAATGGACGGCCCACAGCGCTTGGCTCTGAAGCCTTTACGATTGGCGATTTGTACGCTGAAGAAGAGAGGGAACTGTTGGTGGAGTTGAGAGTGGCCACGTCAGCATTGGGAAGCCATCACGTGATGAACGTGAAGTGTGTCTATAAAGATTCGGTGAAACAGGACACTGTGTGCGGTAGGGAGCAAGCGCTTCCAGTGGCGCTACGGCTTGGTGGCAGAGCCGAGAGGCTTAGGAATGTGTTTGTGACGAGCCGAGCCATTTCCAAGTCAAGGAAACTGTTGGATCAGAATGAGTTTTCTAATGCTTATTGTGTGGTGGCTTCGGCTCGAGAGCTTTTAGCTCAGTGTGGCTCGGCTTCAGTGGACGAGTATGTGCGTGGCTTGGAGGCTGAGCTGGCAGAGATTCAGTGGCAGAAAGCACAGTATGAGAGGCAAGGGAGGGCGGTGGATGAGAGTGGCGAGGAGGCATTGACACCGACTTCAGCTTGGAGAGCAGCTGAGAAGCTGGCTAAGATGGCAACAATGAAGAAGTCATTGAATAGAGTCACTGACTTGCACGGCTTCGAAAATGCTAGGTTCTAG 1896 0.5248 MGGGWRRAFCTRNPESTILHNQHRSQSPTTCVRLSFLSVSDTADSTSNPSTPRSPSFKLSLFRNSFKFRSSCGICLNSVKTGLGTAIYTAECGHAFHFPCIAGHVSSNNTCPVCNATWKVVPALPHQNDVVSTKIFEAKKQSDSVRPYDDDEPLPSPFSGCQIAPIPEADENNDDEDQNDVFQGFFINPSKPPMMTKDADSRNVRVKLMPECAVITSSQSHETYALVLRVKAPPPPSWSQIGASPPVDLVTVVDVGAGMSGTKLHMLKRAMRLVISSLGSVDRLAIVAYSDSSKRLMPLRRMTAQGQRVARRIVDRLISGREIAASGGVEALRKAAKVLEDRRERNPFASVVLFSETSNWKHQRESFGFSHVSSRFTFIEVPVQSFGFGKRTGFGFQPDEDHFAKRIEELFSVTVHDLTVQLEVSSHHAEIRDVYSCNNGRPTALGSEAFTIGDLYAEEERELLVELRVATSALGSHHVMNVKCVYKDSVKQDTVCGREQALPVALRLGGRAERLRNVFVTSRAISKSRKLLDQNEFSNAYCVVASARELLAQCGSASVDEYVRGLEAELAEIQWQKAQYERQGRAVDESGEEALTPTSAWRAAEKLAKMATMKKSLNRVTDLHGFENARF* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1127 631 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 21 631 - -
Amo17g1127 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 120 IPR013083 -
Amo17g1127 631 Gene3D von Willebrand factor, type A domain 248 418 IPR036465 -
Amo17g1127 631 Pfam Ring finger domain 71 115 IPR001841 -
Amo17g1127 631 SMART VWA_4 246 457 IPR002035 -
Amo17g1127 631 Pfam von Willebrand factor type A domain 249 355 IPR002035 -
Amo17g1127 631 ProSiteProfiles Zinc finger RING-type profile. 72 115 IPR001841 -
Amo17g1127 631 SUPERFAMILY vWA-like 248 389 IPR036465 -
Amo17g1127 631 MobiDBLite consensus disorder prediction 159 178 - -
Amo17g1127 631 ProSiteProfiles VWFA domain profile. 248 467 IPR002035 -
Amo17g1127 631 SMART ring_2 72 114 IPR001841 -
Amo17g1127 631 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 21 631 - -
Amo17g1127 631 Coils Coil 563 583 - -
Amo17g1127 631 SUPERFAMILY RING/U-box 66 122 - -
Amo17g1127 631 CDD RING-H2 72 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1127 Amo-Chr17 30681622 30684070 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1127 - - gmx:100819417 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1127 17 30681622 30684070 Amo20g1310 20 27344465 27347253 ECH
Amo17g1127 17 30681622 30684070 Amo17g1127 17 30681622 30684070 ECH