Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0546 ATGAAGACTTTCCACTTCCCTAGTAAGATATGTTGCTCCTTGTTCTTACTTGTCCTTTTTGCTCTAATCGCCTCACTAGCTTCGGCAGCACAAACTCATTACCATAATTTTGTTATTCAACCTAAGCCAGTGAAGAGGCTGTGCAAAGTTCAAAACATACTCACTGTCAATGGTCAGTTTCCAGGGCCAACCGTGGAGGCCAGAAACGGAGATTCTCTTGTCATCAAAGTAGTAAATGCAGCAAAGTACAACATCTCTATCCACTGGCATGGATTAAGGATGCTGCGAAATCCATGGGCAGATGGACCTAGCTATGTGACTCAGTGTCCCATAAAGCCAGGGGGAAGTTACACATACCGGTTTACGATCGTAAACCAAGAAGGGACACTATGGTGGCATGCACACACTGGCTTCCTAAGAGCCACTGTCTATGGAGCTCTGATCATCCATCCCAAAATGGGCTCGCCTTATCCCTTCCCTACGCCTCGGCGAGAATTTCCTATCCTTCTTGGGGAATGGTTTGACAGGGATCCAATGCTTCTCTTAAGGCAGGCACAATTTACAGGAGCAGCACCAAATGTATCAGTAGCATATACCATTAACGGGCAACCTGGTGACCTCTACAGATGCTCGAGTCAAGAAACTGCACGCATACTGGTAGATGCCGGGGAGACAATTCTCTTGAGGATCATCAACAGTGCACTCAATCAAGAACTCTTCTTTGGGATTGCCAACCACATGATGACAGTTGTTGGCACAGATGCTGCTTACACCAAGCCTTTCCCCACAAGAGTCCTAACTATAGGACCTGGTCAGACGATCAACGTCCTAGTCACTACCAACCAACCACCAGGTCGATATTACATGGCAGCACGTGCCTATCAAACAGCCCAAAATGCTGCCTTTGACAACACCACTACCACAGCAATACTTGAATACAGATCTGCTAGCCGCAGTAACAAGAACAGACCAATATTGCCGGTTCTTCCAGCCTTCAATGATACAGCCACTGCCACCGCATTCACTACTGGGCTCAGGGGTCTTTCTAGGATTCAAGTCTTTACAAAGGTTGATGTGAGTCTATACTTCATAGTGGGTTTGGGGTTGATCAACTGCACAAACCCTAATAGTCCTAGGTGTCAAGGACCTAATGGCACTCGCTTCACAGCAAGCATGAACAATGTTTCTTTTATACTCCCAAGGACCACCTCCCTAATGCAAGCTTACTATCAAAGAATACCTGGTGTCTTCACCACTGATTTCCCTCCGGTTCCACCTGTACAATTTAATTATACTGGCAGTGTGCCGCGGGGACTATGGACACCTTCCCAAGGAACAAAGCTCTACAAGTTGAAGTATGGTTCTAGGGTGCAAATTGTTTTGCAGGACACAAGTATAGTAACTACCGAAGAACACCCCATGCACATTCATGGATTCCACTTCTTTGTAGTTGGTTCAGGTTTTGGCAACTTCAATCCAGCCATGGATCCAGCCAATTTTAACCTTGTTGATCCACCTGTGAGAAACACCATTGGAACACCTCCTGGAGGATGGGTAGCCATTCGATTTCTGGCTGATAATCCAGGAATTTGGTTTGTCCACTGTCACATAGATTCACATCTAAATTGGGGTTTGGCAACAGCATTTCTAGTGGAGAATGGAGTTGGACCATCACAGTCAGTAATACCTCCACCGATAGATCTGCCCCCATGTTAA 1716 0.4615 MKTFHFPSKICCSLFLLVLFALIASLASAAQTHYHNFVIQPKPVKRLCKVQNILTVNGQFPGPTVEARNGDSLVIKVVNAAKYNISIHWHGLRMLRNPWADGPSYVTQCPIKPGGSYTYRFTIVNQEGTLWWHAHTGFLRATVYGALIIHPKMGSPYPFPTPRREFPILLGEWFDRDPMLLLRQAQFTGAAPNVSVAYTINGQPGDLYRCSSQETARILVDAGETILLRIINSALNQELFFGIANHMMTVVGTDAAYTKPFPTRVLTIGPGQTINVLVTTNQPPGRYYMAARAYQTAQNAAFDNTTTTAILEYRSASRSNKNRPILPVLPAFNDTATATAFTTGLRGLSRIQVFTKVDVSLYFIVGLGLINCTNPNSPRCQGPNGTRFTASMNNVSFILPRTTSLMQAYYQRIPGVFTTDFPPVPPVQFNYTGSVPRGLWTPSQGTKLYKLKYGSRVQIVLQDTSIVTTEEHPMHIHGFHFFVVGSGFGNFNPAMDPANFNLVDPPVRNTIGTPPGGWVAIRFLADNPGIWFVHCHIDSHLNWGLATAFLVENGVGPSQSVIPPPIDLPPC* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0546 571 Pfam Multicopper oxidase 40 152 IPR011707 GO:0005507
Amo01g0546 571 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Amo01g0546 571 CDD CuRO_2_LCC_plant 166 313 IPR034285 -
Amo01g0546 571 CDD CuRO_3_LCC_plant 416 554 IPR034289 GO:0005507
Amo01g0546 571 CDD CuRO_1_LCC_plant 35 151 IPR034288 GO:0005507
Amo01g0546 571 SUPERFAMILY Cupredoxins 159 349 IPR008972 -
Amo01g0546 571 Pfam Multicopper oxidase 421 553 IPR011706 GO:0005507|GO:0016491
Amo01g0546 571 Gene3D - 163 350 IPR008972 -
Amo01g0546 571 SUPERFAMILY Cupredoxins 29 178 IPR008972 -
Amo01g0546 571 TIGRFAM laccase: laccase 30 571 IPR017761 GO:0046274|GO:0048046|GO:0052716
Amo01g0546 571 PANTHER LACCASE-13 8 571 - -
Amo01g0546 571 Gene3D - 21 151 IPR008972 -
Amo01g0546 571 SUPERFAMILY Cupredoxins 354 565 IPR008972 -
Amo01g0546 571 PANTHER MULTI-COPPER OXIDASE 8 571 IPR045087 -
Amo01g0546 571 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Amo01g0546 571 Pfam Multicopper oxidase 165 315 IPR001117 -
Amo01g0546 571 Gene3D - 378 571 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0546 Amo-Chr1 8048633 8051108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0546 K05909 - gmx:100786719 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0546 01 8048633 8051108 Amo17g0818 17 19364733 19368797 PCT
Amo01g0546 01 8048633 8051108 Amo07g1032 07 19207942 19212073 PCT
Amo17g0818 17 19364733 19368797 Amo01g0546 01 8048633 8051108 PCT
Amo07g1032 07 19207942 19212073 Amo01g0546 01 8048633 8051108 PCT