Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3547 ATGGCAAATCACGGTCGAAGGAGTGTGTCATTGACCAACAGTCCCTCACGCCCTAAGAAGAAGAAAAACTTCTCTTCCGAGCTTTCATCCCCTGATATTCGAAAATCCTTTACTCCTCAACGCACGGGAGAGAGAACTGTGAGGTCATTAAGACTTTCAAGAGCATTGACAGTTCCCGACTCAACAAGTATTTCTGAAGCATGTCGTCGTATGGCTGCTCGCAAAGTCGATTCTCTTTTACTAACCGATTCGAATGCTTTGCTCTGTGGAATCCTGACGGACAAGGATATAGCTACAAGAGTTATTGCGCGCGAGGTTAATCTTGAAGATACACCCGTTTCCAAGGTTATGACAAGGAATCCAGTATTCGTCCTTTCCGATACTCTTGCTGTGGAAGCACTCCAAAAGATGGTTCAAGGAAAATTCAGGCATTTACCTGTGGTGGAAAATGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCGCGTCTTGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCAGCGGCTGTTGAAGGTATCGAAAAACACTGGGGACCATCTGCTTCTGGCTCCAATTCCTCATTCTTGGAGACTCTTCGGGACCAGATATTCAAGCCTTCTTTGTCTACAATCATTCCTGAGAAATCAAAGGTTATAACAGTTTCACCAACGGACACAGTTTTGGCAACAACAAAGAAGATGCTTGAACTTCGTGTCAGTTGTGCTGTTGTCATGGTTGATGACAAACCTTGTGGTATCCTCACTTCAAAGGATATCTTGATGCGAGTAATAGCACAAAACCTTCCTGCATCAACAACTCTTGTTGAGAAGGCCATGACTCCAAATCCAGAATGTGCAAAAGTTGATACACCGATTGTTGATGCACTTCACACCATGCAAGATGGAAAATTTTTGCATCTTCCAGTGCTTGATAAAGATGGCACTGTTGTTGCTATGCTTGATGTGATACATATTGCTCATGCTGCTATTGCAACAGCTGGTCAGGTTGGAAATACTGCCAATTTGAACACTGAAGCTGCCGACTCCATGATACAAAAGTTTTGGGATTCGGCCATATCCTTAAGCAGTCCAAATGATGATGACGATGACGATTCACGAAGTGATAGTTCCTTGAAAATGGCTTCTGAGGGAAGAGAAATAGGGAGAACCACTCCTTTTAATGCAGCAAGCATGTTGCAGCAAGCATTTTCGTTCAAAGTACAAGATAGGAAAGGCAGACTTCATAGATTCACATGTGATACTCGGAGCTTGACAGAGGTTATAGCTTCCATTTCTCAGAAAGTTGATAATGACATTGACCCTGATAATAACCTGCCCCAGATTATGTATGAAGACGAAGAACATGATAAAATTGTACTAGCTTCAGACAGTGATCTTGCTGCAGCTGTGGAACACGCAAAGGCAGCTGGTTTAAAGGGATTAAGATTGCATTTAGAGTACTCGGGGCAAAATGATAACCAAAGAAGCTCTAGCAAGGAGAGTTTGTTGGCATACACAAACACAAGTTTAATGTGGCCCTCAACATATAGTGTGGTTGCAGCTGGAGCTGTAATCGTTGCTGGCTTAAGTCTATTAGCATTCTTCAGGCGAAGGTGTCGACCAAGTTTGTATCAAGATCTCAATTTGGGGAGCAGATAG 1680 0.431 MANHGRRSVSLTNSPSRPKKKKNFSSELSSPDIRKSFTPQRTGERTVRSLRLSRALTVPDSTSISEACRRMAARKVDSLLLTDSNALLCGILTDKDIATRVIAREVNLEDTPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVVAILDIAKCLYDAIARLERAAEKGKAIAAAVEGIEKHWGPSASGSNSSFLETLRDQIFKPSLSTIIPEKSKVITVSPTDTVLATTKKMLELRVSCAVVMVDDKPCGILTSKDILMRVIAQNLPASTTLVEKAMTPNPECAKVDTPIVDALHTMQDGKFLHLPVLDKDGTVVAMLDVIHIAHAAIATAGQVGNTANLNTEAADSMIQKFWDSAISLSSPNDDDDDDSRSDSSLKMASEGREIGRTTPFNAASMLQQAFSFKVQDRKGRLHRFTCDTRSLTEVIASISQKVDNDIDPDNNLPQIMYEDEEHDKIVLASDSDLAAAVEHAKAAGLKGLRLHLEYSGQNDNQRSSSKESLLAYTNTSLMWPSTYSVVAAGAVIVAGLSLLAFFRRRCRPSLYQDLNLGSR* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3547 559 SMART PB1_new 409 495 IPR000270 GO:0005515
Amo13g3547 559 ProSiteProfiles PB1 domain profile. 407 495 IPR000270 GO:0005515
Amo13g3547 559 SUPERFAMILY CBS-domain pair 223 335 IPR046342 -
Amo13g3547 559 Gene3D - 213 340 IPR046342 -
Amo13g3547 559 SMART cbs_1 289 337 IPR000644 -
Amo13g3547 559 SMART cbs_1 224 271 IPR000644 -
Amo13g3547 559 SMART cbs_1 120 164 IPR000644 -
Amo13g3547 559 SMART cbs_1 54 102 IPR000644 -
Amo13g3547 559 MobiDBLite consensus disorder prediction 1 48 - -
Amo13g3547 559 ProSiteProfiles CBS domain profile. 286 343 IPR000644 -
Amo13g3547 559 Gene3D - 410 492 - -
Amo13g3547 559 Gene3D - 28 182 IPR046342 -
Amo13g3547 559 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 29 534 - -
Amo13g3547 559 Pfam PB1 domain 410 493 IPR000270 GO:0005515
Amo13g3547 559 MobiDBLite consensus disorder prediction 29 46 - -
Amo13g3547 559 MobiDBLite consensus disorder prediction 369 397 - -
Amo13g3547 559 MobiDBLite consensus disorder prediction 1 19 - -
Amo13g3547 559 SUPERFAMILY CBS-domain pair 44 160 IPR046342 -
Amo13g3547 559 ProSiteProfiles CBS domain profile. 51 111 IPR000644 -
Amo13g3547 559 CDD CBS_pair_MUG70_2 222 329 - -
Amo13g3547 559 ProSiteProfiles CBS domain profile. 117 175 IPR000644 -
Amo13g3547 559 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 29 534 IPR034896 -
Amo13g3547 559 CDD CBS_pair_MUG70_1 52 168 - -
Amo13g3547 559 Pfam CBS domain 54 99 IPR000644 -
Amo13g3547 559 Pfam CBS domain 282 335 IPR000644 -
Amo13g3547 559 Pfam CBS domain 223 268 IPR000644 -
Amo13g3547 559 Pfam CBS domain 113 157 IPR000644 -
Amo13g3547 559 SUPERFAMILY CAD & PB1 domains 400 497 - -
Amo13g3547 559 ProSiteProfiles CBS domain profile. 218 278 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3547 Amo-Chr13 120184751 120189075 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3547 - - adu:107479973 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3547 13 120184751 120189075 Amo03g2533 03 110463374 110467008 hybridization
Amo13g3547 13 120184751 120189075 Amo08g2198 08 34936357 34943001 PCT
Amo08g2437 08 38118992 38123712 Amo13g3547 13 120184751 120189075 PCT