Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2533 ATGGCAAATCACGGTCGAAGGAGTGTGTCATTGACCAACAGTCCCTCGCGCCCTAAGAAGAAGAAAAACTTCTCTTCCGAGCTTTCATCCCCTGATATTCGAAAATCCTTTACCCCTCAACGCACGGGAGAGAGAACTGTGAGGTCATTAAGACTTTCAAGAGCATTGACAGTGCCCGACTCAACAAGTATTTCTGAAGCATGTCGTCGTATGGCTGCTCGCAAAGTCGATTCTCTTTTACTAACCGATTCGAATGCTTTGCTCTGTGGAATCCTGACGGACAAGGATATAGCTACAAGAGTCATTGCGCGCGAGGTTAATCTTGAAGACACACCCGTTTCCAAGGTTATGACAAGGAATCCAGTATTCGTCCTTTCCGATACTCTTGCTGTGGAAGCACTCCAAAAGATGGTTCAAGGAAAATTCAGGCATTTACCTGTGGTGGAAAATGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCGCGTCTTGAAAGGGCAGCTGAGAAAGGAAAGGCAATTGCAGCGGCAGTTGAAGGCTCCAATTCCTCATTCTTGGAGACTCTTCGGGACCAGATATTCAAGCCTTCTTTGTCTACAATTATTCCTGAGAAATCAAAGGTTATAACAGTTTCACCAACGGACACAGTTTTGGCAACAACAAAGAAGATGCTTGAACTTCGTGTCAGTTGTGCTGTTGTCATGGTTGATGACAAACCTTGTGGTATCCTCACTTCAAAGGATATCTTGATGCGAGTAATAGCGCAAAACCTTCCTGCATCAACAACTCTTGTTGAGAAGGCCATGACTCCAAATCCAGAATGTGCAAAAGTTGATACACCGATTGTTGATGCACTTCACACCATGCAAGATGGAAAATTTTTACATCTTCCAGTGCTTGATAAAGATGGCACTGTTGTTGCTATGCTTGATGTGATACATATTGCTCATGCTGCTATTGCAACAGCTGGTCAGGTTGGAAATACTGCCAATTTGAACACTGAAGCTGCCGACTCCATGATACAAAAGTTTTGGGATTCGGCCATATCCTTAAGCAGTCCAAATGATGATGACGATGACGATTCACGAAGTGATAGTTCCTTGAAAATTGCTTCTGAGGGAAGAGAAATAGGGAGAACCACTCCTTTTAGTGCAGCAAGCATGCTGCAGCAAGCATTTTCTTTCAAAGTACAAGATAGGAAAGGCAGACTTCATAGATTCACATGTGATACTCGGAGCTTGACAGATGTTATAGCTTCCATTTCTCAGAAAGTTGATAATGACATTGACCCTGATAATAACCTGCCCCAGATTATGTATGAAGACGAAGAACATGATAAAATTGTACTAGCTTCAGACAGTGATCTTGCTGCAGCTGTGGAACACGCAAAGGCAGCTGGTTTAAAGGGATTAAGATTGCATTTAGAGTACTCGGGGCAAAATGATAACCAAAGAAGCTCTAGCAAGGAGAGTTTGTTGGCATACACAAACACAAGTTTAATGTGGCCCTCAACATATAGTGTGGTTGCAGCTGGAGCTGTAATCGTTGCTGGCTTAAGCCTATTAGCATTCTTCAGGCGAAGGTGA 1605 0.4324 MANHGRRSVSLTNSPSRPKKKKNFSSELSSPDIRKSFTPQRTGERTVRSLRLSRALTVPDSTSISEACRRMAARKVDSLLLTDSNALLCGILTDKDIATRVIAREVNLEDTPVSKVMTRNPVFVLSDTLAVEALQKMVQGKFRHLPVVENGEVVAILDIAKCLYDAIARLERAAEKGKAIAAAVEGSNSSFLETLRDQIFKPSLSTIIPEKSKVITVSPTDTVLATTKKMLELRVSCAVVMVDDKPCGILTSKDILMRVIAQNLPASTTLVEKAMTPNPECAKVDTPIVDALHTMQDGKFLHLPVLDKDGTVVAMLDVIHIAHAAIATAGQVGNTANLNTEAADSMIQKFWDSAISLSSPNDDDDDDSRSDSSLKIASEGREIGRTTPFSAASMLQQAFSFKVQDRKGRLHRFTCDTRSLTDVIASISQKVDNDIDPDNNLPQIMYEDEEHDKIVLASDSDLAAAVEHAKAAGLKGLRLHLEYSGQNDNQRSSSKESLLAYTNTSLMWPSTYSVVAAGAVIVAGLSLLAFFRRR* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2533 534 MobiDBLite consensus disorder prediction 1 48 - -
Amo03g2533 534 Gene3D - 28 182 IPR046342 -
Amo03g2533 534 ProSiteProfiles CBS domain profile. 275 332 IPR000644 -
Amo03g2533 534 SMART PB1_new 398 484 IPR000270 GO:0005515
Amo03g2533 534 SUPERFAMILY CBS-domain pair 212 324 IPR046342 -
Amo03g2533 534 Gene3D - 398 481 - -
Amo03g2533 534 MobiDBLite consensus disorder prediction 358 379 - -
Amo03g2533 534 MobiDBLite consensus disorder prediction 29 46 - -
Amo03g2533 534 SUPERFAMILY CAD & PB1 domains 388 486 - -
Amo03g2533 534 MobiDBLite consensus disorder prediction 1 19 - -
Amo03g2533 534 ProSiteProfiles CBS domain profile. 51 111 IPR000644 -
Amo03g2533 534 Pfam PB1 domain 399 482 IPR000270 GO:0005515
Amo03g2533 534 ProSiteProfiles CBS domain profile. 117 175 IPR000644 -
Amo03g2533 534 SUPERFAMILY CBS-domain pair 44 160 IPR046342 -
Amo03g2533 534 CDD CBS_pair_MUG70_1 52 168 - -
Amo03g2533 534 ProSiteProfiles PB1 domain profile. 396 484 IPR000270 GO:0005515
Amo03g2533 534 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 29 522 - -
Amo03g2533 534 Gene3D - 202 329 IPR046342 -
Amo03g2533 534 CDD CBS_pair_MUG70_2 211 318 - -
Amo03g2533 534 Pfam CBS domain 212 257 IPR000644 -
Amo03g2533 534 Pfam CBS domain 271 324 IPR000644 -
Amo03g2533 534 Pfam CBS domain 113 157 IPR000644 -
Amo03g2533 534 Pfam CBS domain 54 99 IPR000644 -
Amo03g2533 534 ProSiteProfiles CBS domain profile. 207 267 IPR000644 -
Amo03g2533 534 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 29 522 IPR034896 -
Amo03g2533 534 SMART cbs_1 213 260 IPR000644 -
Amo03g2533 534 SMART cbs_1 278 326 IPR000644 -
Amo03g2533 534 SMART cbs_1 120 164 IPR000644 -
Amo03g2533 534 SMART cbs_1 54 102 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2533 Amo-Chr3 110463374 110467008 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2533 - - adu:107479973 978.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3547 13 120184751 120189075 Amo03g2533 03 110463374 110467008 hybridization
Amo03g2533 03 110463374 110467008 Amo08g2198 08 34936357 34943001 PCT
Amo08g2437 08 38118992 38123712 Amo03g2533 03 110463374 110467008 PCT