Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g3255 ATGTCAATTACCGAGTATGCTTTGAGTTCAATTCCCAAGGAGCCGGTCAATTGGGAAAGCCAACTGGGACATGTCCCTGTGGATCCAATTGTTATATATCTCACGGTGGATGGTGTTGTCACCCCAATCCGAGTCTTGGAGTCTGATTCCATCGCTTCCGTCAAGATGAGGATTCAGACCTGCAAAGGCTTTGTGGTCAAGAACCAGAAGCTTGTCTACAGTGGCAGAGAGCTTTCGCGCAACGATACACTTATCAAGGATTATGGGGTCACTGATGGTAATGTTCTTCATTTGGTTCTTCGCCTCTCCGATCTTCTCTTCATCGTTGTCAAAACCGTTAGTGGCAAAGAATTTCGATTCCATATTGATGGGCATAGAAATGTTGGATACCTTAAGCAACGAATAAAAAGCAAAGGGGAAGAAGGTTTGGTCGATTTTGATGATCAAGATATTTTTTGCAATAATGAGAAGCTTGATGATCAGAGACTCTTTCATGAGTTATGCAAAAATGATGGCAATGTTATTCATTTGATAATAAAAAAATCAGCTAAGATTAGGACTACACCAGTTTGCAAAGATTTAAAACTTTTGGTTGAGGCAGGTGAATTCAAACAAGCGGAAGAGCAGACAATTGAGGTGCCAAAGATACCAGCTGGTGTTAGTTTTTGGCTAGAACCAGTTATTGTGAATCCAAAGATGGATCTTTTTCCTTACCTATGGGATTTGATCAACACGACATACGAAGGTTTGAAGAGAGGAAATAGCCCTATTAGGTCCTTGGAGGGAACAGGAGGTACTTACTTGATGCAAGATTCAACAGGACACCAATATGTTTCAGTATTCAAGCCCATGGATGAGGAGCCAATGGCTGTCAACAACCCAAGAGGGCTACCTTGTTCATCCAATAATGAAGGCCTCAAAAGAGGGACAAAGGTAGGGGAAGGAGCTTTGAGGGAAGTTGCAGCTTACATATTGGATCATCCAAGGAAAGGGTCTCGCCTTATGACAGGCGAAGCCATAGGCTTTGCCGGTGTTCCCCCTACCGTTATTGTTCAATGCTTGCATAAAGAATTTCACCATCCAAATGGGTTTGCTTGCTCATTGAAGCATGTCAAGATTGGATCCTTACAGAAGTTCATGACTAATGATGGCAACTGTGAGGACATTGGACCAAGGGCCTTTCCTGTGGAGGAGGTGCATAAAATTACTGTGCTCGACATAAGGTTGGCCAATACAGATAGACATGCTGGAAATATCTTGATCAGAAAAGAAGCTGATGGTCAAATGAAGCTCATTCCTATTGATCATGGCTACTGTCTACCAGCCAAATTTGAAGATTGCACATTTGATTGGCTTTATTGGCCGCAAGCACGTCAGCCTTACTCTCCTGATGCAATTGAATATATAAACTCTTTGGATGCAGAAAAAGATATAGAGCTTTTGAAATATTATGGATGGGATATGCCGATTGAATATGCCAGAACACTTCGGATTTCCACAATGTTGCTTAAGAAAGGTGTTCAAAGAGGTCTTACTCCCTTCGATATTGGAAGCATTATGTGCCGAGAAAATCTGAACAAGGAATCTGTAATTGAGGAGATCATTCGCCAAGCTCAGGATTCCTTGCTTCCTGGCATGGATGAATCCGCATTTCTTAAAACTATATCTGAGATCATGGATTCCCGCCTTGAAAAGCTTGCAAACCACTAG 1710 0.4211 MSITEYALSSIPKEPVNWESQLGHVPVDPIVIYLTVDGVVTPIRVLESDSIASVKMRIQTCKGFVVKNQKLVYSGRELSRNDTLIKDYGVTDGNVLHLVLRLSDLLFIVVKTVSGKEFRFHIDGHRNVGYLKQRIKSKGEEGLVDFDDQDIFCNNEKLDDQRLFHELCKNDGNVIHLIIKKSAKIRTTPVCKDLKLLVEAGEFKQAEEQTIEVPKIPAGVSFWLEPVIVNPKMDLFPYLWDLINTTYEGLKRGNSPIRSLEGTGGTYLMQDSTGHQYVSVFKPMDEEPMAVNNPRGLPCSSNNEGLKRGTKVGEGALREVAAYILDHPRKGSRLMTGEAIGFAGVPPTVIVQCLHKEFHHPNGFACSLKHVKIGSLQKFMTNDGNCEDIGPRAFPVEEVHKITVLDIRLANTDRHAGNILIRKEADGQMKLIPIDHGYCLPAKFEDCTFDWLYWPQARQPYSPDAIEYINSLDAEKDIELLKYYGWDMPIEYARTLRISTMLLKKGVQRGLTPFDIGSIMCRENLNKESVIEEIIRQAQDSLLPGMDESAFLKTISEIMDSRLEKLANH* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g3255 569 CDD Ubl_ubiquitin_like 108 178 - -
Amo13g3255 569 SUPERFAMILY Ubiquitin-like 102 181 IPR029071 -
Amo13g3255 569 Gene3D - 13 104 - -
Amo13g3255 569 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Amo13g3255 569 Pfam Phosphatidylinositol 3- and 4-kinase 262 515 IPR000403 -
Amo13g3255 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 567 IPR044571 -
Amo13g3255 569 SMART ubq_7 106 180 IPR000626 GO:0005515
Amo13g3255 569 SMART ubq_7 29 101 IPR000626 GO:0005515
Amo13g3255 569 ProSiteProfiles Ubiquitin domain profile. 106 184 IPR000626 GO:0005515
Amo13g3255 569 Gene3D - 107 193 - -
Amo13g3255 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 567 - -
Amo13g3255 569 SUPERFAMILY Ubiquitin-like 35 103 IPR029071 -
Amo13g3255 569 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 253 550 IPR000403 -
Amo13g3255 569 Pfam Ubiquitin family 36 102 IPR000626 GO:0005515
Amo13g3255 569 SUPERFAMILY Protein kinase-like (PK-like) 409 565 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g3255 Amo-Chr13 103123330 103125475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g3255 1 567 Acyl Lipid Metabolism Gene Families AT5G24240 57.565 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g3255 - - gmx:100809172 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3255 13 103123330 103125475 Amo13g3255 13 103123330 103125475 ECH
Amo13g3255 13 103123330 103125475 Amo12g0161 12 2442743 2445788 ECH
Amo13g3255 13 103123330 103125475 Amo03g1805 03 54868197 54870332 hybridization
Amo05g2354 05 50196235 50198595 Amo13g3255 13 103123330 103125475 PCT