Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1805 ATGTCAATTACCGAGTATGCTTTGAGTTCAATTCCCAAGGAGCCGGTCAATTGGGAAAGCCAACTGGGACATGTCCCTGTGGATCCAATTWTTATATATCTCACGGTGGATGGTGTTGTCACCCCAATCCGYGTCTTGGAGTCTGATTCCATCGCTTCCGTCAAGATGAGGATTCAGACCTGCAAAGGCTTTGTGGTCAAGAACCAGAAGCTTGTCTACAGTGGCAGAGAGCTTMCGCGCAACGATACACTTATCAAGGATTATGGMGTCACTGATGGTAATGTTCTTCATTTGGTTCTTCGRCTCTCCGATCTTCTCTTCATCGTTGTCAAAACCGTTAGTGGCAAAGAATTTCGATTCCATATTGATGGGCATAGAAATGTTGGATACCTTAAGCAACGAATAAAAAYCAAAGGYGAAGAAGGTTTGGTCGATTTTGATGATCAAGATATTTTTTGCAATAATGAGAAGCTTGATGATCAGAGACTCTTTCATGAGTTATGCAAAAATGATGGCAATGTTATTCATTTGATAATAAAAAAATCAGCTAAGATTAGGACTACACCAGTTTGCAAAGATTTAAAACTTTTGGTTGAGGCAGGTGAATTCAAACAAGCGGAAGAGCAGSCAATTGAGGTGCCAAAGATACCAGCTGGTGTTAGTTTTTGGCTAGAACCAGTTATTGTGAATCCAAAGATGGATCTTTTTCCTTACCTATGGGATTTGATCAACACGACATACGAAGGTTTGAAGAGAGGAAATAGCCCTATTAGGTCCTTGGAGGGAACAGGAGGTACTTACTTGATGCAAGATTCAACAGGACACCAATATGTTTCYGTATTCAAGCCCATGGATGAGGAGCCAATGGCTGTCAACAACCCAAGAGGGCTACCTTGTTCATCCAATAATGAAGGCCTCAAAAGAGGGACAAAGGTAGGGGAAGGAGCTTTGAGGGAAGTTGCAGCTTACATATTGGATCATCCAAGGAASGGGTCMCGCCTTATGACAGGCGAAGCCATAGGCTTTGCCGGTGTTCCCCCTACCGTTATTGTRCAATGCTTGCATAAAGAATTTCACCATCCAAATGGGTTTGCTTGCTCATTGAAGCATGTCAAGATTGGATCCTTACAGAAGTTCATGACTAATGATGGCAARTGTGAGGACATTGGACCAAGGGCCTTTCCTGTGGAGGAGGTGCATAAAATTACTGTGCTCGACATAAGGTTGGCCAATACAGATAGACATGCTGGAAATATATTGATCAGAAAAGAAGCTGATGGTCAAATTAAGCTCATTCCTATTGATCATGGCTACTGTCTACCAGCCAAATTTGAAGATTGCACCTTTGATTGGCTTTATTGGCCGCAAGCACGTCAGCCTTACTCTCCTGATGCAATTGAATATATAAACTCTTTGGATGCAGAAAAAGATATAGAGCTTTTGAAATATTATGGATGGGATATGCCGATTGAATATGCCAGAACACTTCGYATTTCCACAATGTTGCTTAAGAAAGGTGTTCAAAGAGGTCTTACTCCCTTCGATATTGGAAGCATTATGTGCCGAGAAAATCTGAACAAGGAATCTGTAATTGAGGAGACCATTCGCCAAGCTCAGGATTCCTTGCTTCCTGGCATGGATGAATCCGCATTTCTTAAAACTATCTCTGAGATCATGGATTCCCGCCTTGAAAAGCTTGCAAACCACTAG 1710 0.4175 MSITEYALSSIPKEPVNWESQLGHVPVDPIXIYLTVDGVVTPIRVLESDSIASVKMRIQTCKGFVVKNQKLVYSGRELXRNDTLIKDYGVTDGNVLHLVLRLSDLLFIVVKTVSGKEFRFHIDGHRNVGYLKQRIKXKGEEGLVDFDDQDIFCNNEKLDDQRLFHELCKNDGNVIHLIIKKSAKIRTTPVCKDLKLLVEAGEFKQAEEQXIEVPKIPAGVSFWLEPVIVNPKMDLFPYLWDLINTTYEGLKRGNSPIRSLEGTGGTYLMQDSTGHQYVSVFKPMDEEPMAVNNPRGLPCSSNNEGLKRGTKVGEGALREVAAYILDHPRXGSRLMTGEAIGFAGVPPTVIVQCLHKEFHHPNGFACSLKHVKIGSLQKFMTNDGKCEDIGPRAFPVEEVHKITVLDIRLANTDRHAGNILIRKEADGQIKLIPIDHGYCLPAKFEDCTFDWLYWPQARQPYSPDAIEYINSLDAEKDIELLKYYGWDMPIEYARTLRISTMLLKKGVQRGLTPFDIGSIMCRENLNKESVIEETIRQAQDSLLPGMDESAFLKTISEIMDSRLEKLANH* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1805 569 CDD Ubl_ubiquitin_like 108 178 - -
Amo03g1805 569 Pfam Ubiquitin family 36 102 IPR000626 GO:0005515
Amo03g1805 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 567 IPR044571 -
Amo03g1805 569 SMART ubq_7 30 101 IPR000626 GO:0005515
Amo03g1805 569 SMART ubq_7 106 180 IPR000626 GO:0005515
Amo03g1805 569 Gene3D - 107 193 - -
Amo03g1805 569 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 567 - -
Amo03g1805 569 ProSiteProfiles Ubiquitin domain profile. 32 101 IPR000626 GO:0005515
Amo03g1805 569 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 253 550 IPR000403 -
Amo03g1805 569 SUPERFAMILY Protein kinase-like (PK-like) 409 565 IPR011009 -
Amo03g1805 569 Pfam Phosphatidylinositol 3- and 4-kinase 262 515 IPR000403 -
Amo03g1805 569 Gene3D - 12 104 - -
Amo03g1805 569 SUPERFAMILY Ubiquitin-like 35 103 IPR029071 -
Amo03g1805 569 ProSiteProfiles Ubiquitin domain profile. 106 184 IPR000626 GO:0005515
Amo03g1805 569 SUPERFAMILY Ubiquitin-like 102 181 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1805 Amo-Chr3 54868197 54870332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1805 1 567 Acyl Lipid Metabolism Gene Families AT5G24240 56.870 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1805 - - gmx:100809172 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3255 13 103123330 103125475 Amo03g1805 03 54868197 54870332 hybridization
Amo05g2354 05 50196235 50198595 Amo03g1805 03 54868197 54870332 PCT