Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2354 ATGTCAGCTGCTGATGTTGCTTTGAGTCCGATTCGTCAAGAATCGGCACATTGGCTTGGACCTCTCTCTGGTGAATCCATATTGATATATCTCACTGTGGATGGTGTTATGACTCCAATGCGTGTGTTGGAGTCAGATTCCATTTCTTCAGTGAAAATGAGGATTCAAACATGCACTGGAGTCTCAGGGAAGAAGCAAAAGCTTGTCTCTAATGGCAGAGAGCTTGCCCGCAATGATTCACTCATCAAGGATTACGGTGTCACTTCTGGGAATGTTGTTCATTTGGTTCTTCGTCTCTCTGATCTTATCTTCATTGTTGTAAGGACCACGACTGAGAAGGAGGTCGAGTTTCGTGTCGATCGGCATAGGAATGTTGCGTACCTCAAGCAGCATATTAAGAAGAAGGGGAAAGGCTCCATTGATATTGAAAATGAAGAATTTTTCTGTGATGGGGAAAAGCTTGATGATCAAAAGCTATTCCATGACATATGCAAGAGTGATGATGATGTGATTCATTTGATAGTTAAGAAATCATCAGCACAGGTTAAGGCCACACCAGTTCAAAAGGATTTGGAGCTTTCTGTTGAGGCTGCAACTGCACCATGTGTAGATGGAGAGAATACTAATCAAGCAACTAAGATTCCTCCACCTGGTGTAGATTTTTGGTTGGAACCAGTTATTGTGAATCCTAAGATCAATTTTTTCCCTTTCCTTTGGGACATGATCAACTCCACATTTGATGGTTTGAAGAATAAACATCATCCTATTAGGTCTTCTGAGGGCACAGGTGGTGCTTACCTCATGCAAGATTCATCAGGGATGGAATATGTTTCTGTGTTTAAGCCAATTGATGAGGAGCCAATGGCCGTGAACAATCCTCAAGGCCTGCCACTTTCGTCAAACGGCGAAGGGTTGAAAAGAGGGACAAAGGTGGGGGAAGGCGCCGTGAGAGAAGTCGCTGCATATGTATTGGATCATCCAAGGGCCGGGCCGCGTTTGGTGTCTGGTGAGGCTGTAGGCTTTGCTGGTGTTCCACCTACTGCTATGGTCAGGTGTTTGCATGAAGCATTTAATCACCCAGATGGATATGCTTGCTCAGCCAAGCATGTCAAGATGGGGTCATTGCAGATGTACATGAACAATGATGGCAACTGCGAGGACATTGGACCCGGTGCTTTTCCAGTGGAGGAGGTACATAAGATTACTCTTCTTGATATAAGAATGGCCAATGCAGATAGGCATGCTGGCAACATTTTGTTCAAGAAGGAGGCAGGTGGCCACATTTCTCTCATTCCTATTGATCACGGCTACTGTCTACCGGAACAATTTGAAGATTGCACATTTGATTGGCTATACTGGCCCCAAGCACGCCAACCTTACTCTGCTGATACAGTTGATTATATTAGGTCCCTGGATGCTGAGAAAGATATAGAACTTCTGAAATATTATGGGTGGGATGTTCCAGTTGAGTGTGCACGTATACTCCGTGTCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCTTATGACATTGGAAGCATCATGTGCAGGCAAAATTTCAAGCAAGAATCAGCGATTGAGAAGATTGTTTATGAGGCACAGGAATCATTGTTACCTGGCATGGAGGAATCTGCATTTCTTGAATCTGTCTCGAAGATCATGGATTCCTGGCTCGATAAGCTTTCAAAATAG 1704 0.4419 MSAADVALSPIRQESAHWLGPLSGESILIYLTVDGVMTPMRVLESDSISSVKMRIQTCTGVSGKKQKLVSNGRELARNDSLIKDYGVTSGNVVHLVLRLSDLIFIVVRTTTEKEVEFRVDRHRNVAYLKQHIKKKGKGSIDIENEEFFCDGEKLDDQKLFHDICKSDDDVIHLIVKKSSAQVKATPVQKDLELSVEAATAPCVDGENTNQATKIPPPGVDFWLEPVIVNPKINFFPFLWDMINSTFDGLKNKHHPIRSSEGTGGAYLMQDSSGMEYVSVFKPIDEEPMAVNNPQGLPLSSNGEGLKRGTKVGEGAVREVAAYVLDHPRAGPRLVSGEAVGFAGVPPTAMVRCLHEAFNHPDGYACSAKHVKMGSLQMYMNNDGNCEDIGPGAFPVEEVHKITLLDIRMANADRHAGNILFKKEAGGHISLIPIDHGYCLPEQFEDCTFDWLYWPQARQPYSADTVDYIRSLDAEKDIELLKYYGWDVPVECARILRVSTMLLKKGVERGLTPYDIGSIMCRQNFKQESAIEKIVYEAQESLLPGMEESAFLESVSKIMDSWLDKLSK* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2354 567 SUPERFAMILY Ubiquitin-like 98 178 IPR029071 -
Amo05g2354 567 ProSiteProfiles Ubiquitin domain profile. 29 98 IPR000626 GO:0005515
Amo05g2354 567 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 567 IPR044571 -
Amo05g2354 567 SUPERFAMILY Protein kinase-like (PK-like) 409 565 IPR011009 -
Amo05g2354 567 SMART ubq_7 27 98 IPR000626 GO:0005515
Amo05g2354 567 SMART ubq_7 103 176 IPR000626 GO:0005515
Amo05g2354 567 ProSiteProfiles Ubiquitin domain profile. 103 180 IPR000626 GO:0005515
Amo05g2354 567 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 567 - -
Amo05g2354 567 Gene3D - 104 192 - -
Amo05g2354 567 Pfam Ubiquitin-2 like Rad60 SUMO-like 105 175 IPR022617 -
Amo05g2354 567 CDD Ubl_ubiquitin_like 105 174 - -
Amo05g2354 567 Pfam Phosphatidylinositol 3- and 4-kinase 261 514 IPR000403 -
Amo05g2354 567 Pfam Ubiquitin family 34 99 IPR000626 GO:0005515
Amo05g2354 567 Gene3D - 23 101 - -
Amo05g2354 567 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 252 549 IPR000403 -
Amo05g2354 567 SUPERFAMILY Ubiquitin-like 32 100 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2354 Amo-Chr5 50196235 50198595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2354 1 566 Acyl Lipid Metabolism Gene Families AT5G24240 54.530 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2354 - - gmx:100787492 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2354 05 50196235 50198595 Amo13g3255 13 103123330 103125475 PCT
Amo05g2354 05 50196235 50198595 Amo03g1805 03 54868197 54870332 PCT