Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0161 ATGTCATCTTCCGGTGTTACCATTCTTAGCCCTGTGCCAAGGGAGTCACTGTTTACTCCAAATGGGTTCACTCCACTGCACTTGTCTATGGACCAAGAGTCCATATTCATATACCTTTCCTTCTCGGGGTCTGTGACCCCGATGCGCGTGCTGCCCTGCGATACCATCGAGTCGGTAAAACTCAAAATCCAAAGGAATGAAGGTCTTCCTTCATTGAAAAACAAGCAGAGATTAGTTTGTGGCGGTCGAGAGCTTGCGCGGAGCAATTCGCTCCTCAAGGACTATGGGATTACAGAAGGGAATGTCTTGCATTTGGTGATCCGGCTCTCGGATTTGCAGACCATCAATGTGAAAACTTCTTGTGGCAAGGAGTTCACTTTTCAGGTGGAAAGATGCAGGGATGTTGGGTATGTCAAGCAAGAGATTGCGAAGAGGGAGAAACAGCTCGCTGATCCTGAACAGCAAGAAGTAGTGTGTAATGGGGAGCCGCTTCAGGATGAGAAGATTATAGATGAGATATGCAGCAAACATAATGATGCGATGATACATCTTTTTGTTAGGTTGAAGTATGCAGAAGTTAGTACAGGACTCGACGAGTTGTCTGTTGTTGCGACGGAGTTGAATGATGCAAAACATTTCGACGCTGATGAGGATGGTTATAGGAGGAAATACGATGCTGGTAAAGAAGATGCAGGAAAGGAGCATGAACCAAATGAGAAAACTGTGCCAAGGACTCTTGGTACAAATGATCTTTTGGAGCCGATCATTGTTAACCCTAAAGTGGAGCTGGATTCTGAGGTTTGGAATATGATAAACTCTACATATGATGGATTAGATCATGGAAATAGTCCAATTAGATCTGCAGAGGGCACAGGAGGAGCTTATTTCATGCTTGATTCGACAGGGCACAAGTATGTAGCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGAGAATAACCCTAGAGGTTTACCTTTGTCATTAGATGGTGAAGGCTTAAAGAAGGGTACTAGAGTTGGCCAAGGAGCGTTCAGGGAGGTTGCAGCTTACATTTTGGACCATCCGATAACAGGGCACAGGTCGTTATTTGGCGATGCAAAGGGCTTCGCTGGGGTTCCGCCTACTGCTTTGGTTAAGTGCTTGCATGAAGGATTTAACCATCCGGGTGACGTGACTACTAAGATTGGCTCCTTGCAAATGTTCATTGAGAATAATGGAAGCTGTGAGGATATGGGCCCCGGTGCTTTCCCTGTGAAGGAAGTGCATAAGATTTCCGTGTTGGACATGAGGCTGGCTAATGTTGATAGGCATGCCGGGAATATTTTGATCGGCAAGGATGCTGAAAATGGCCAAGCTGTTCTCATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAGGATTGCACCTTTGAATGGTTGTATTGGCCGCAAGCTCGCCAGCCATACTCGCCGGAGGTTATTGACTATATAAACTCACTGGATGCTGAAGAAGACATTGCCCTTTTGAAGTTCCATGGATGGGATCTTCCAGTTGAATGCGCCCGTGTTCTTCGAATCTCAACCATGCTTCTGAAGAAAGGAGTTGAGAGAGGAATGACCCCATTTGCCATTGGAAACTTGATGTGTAGAGAATCCTTGAACAAGGAATCAGTGATTGAAGGGATTGTGCAAGAAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCCACATATCTTGAAGCTGTTGCATCCATCATGGACAAGCACCTTGATGAGATATGCACTTCAATTTCTTAA 1788 0.4536 MSSSGVTILSPVPRESLFTPNGFTPLHLSMDQESIFIYLSFSGSVTPMRVLPCDTIESVKLKIQRNEGLPSLKNKQRLVCGGRELARSNSLLKDYGITEGNVLHLVIRLSDLQTINVKTSCGKEFTFQVERCRDVGYVKQEIAKREKQLADPEQQEVVCNGEPLQDEKIIDEICSKHNDAMIHLFVRLKYAEVSTGLDELSVVATELNDAKHFDADEDGYRRKYDAGKEDAGKEHEPNEKTVPRTLGTNDLLEPIIVNPKVELDSEVWNMINSTYDGLDHGNSPIRSAEGTGGAYFMLDSTGHKYVAVFKPIDEEPMAENNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPITGHRSLFGDAKGFAGVPPTALVKCLHEGFNHPGDVTTKIGSLQMFIENNGSCEDMGPGAFPVKEVHKISVLDMRLANVDRHAGNILIGKDAENGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEVIDYINSLDAEEDIALLKFHGWDLPVECARVLRISTMLLKKGVERGMTPFAIGNLMCRESLNKESVIEGIVQEALDSVLPGTSEATYLEAVASIMDKHLDEICTSIS* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0161 595 MobiDBLite consensus disorder prediction 226 245 - -
Amo12g0161 595 Gene3D - 114 191 - -
Amo12g0161 595 SUPERFAMILY Ubiquitin-like 107 188 IPR029071 -
Amo12g0161 595 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 281 574 IPR000403 -
Amo12g0161 595 SMART ubq_7 113 187 IPR000626 GO:0005515
Amo12g0161 595 SMART ubq_7 35 108 IPR000626 GO:0005515
Amo12g0161 595 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Amo12g0161 595 Pfam Ubiquitin family 37 109 IPR000626 GO:0005515
Amo12g0161 595 Gene3D - 30 113 - -
Amo12g0161 595 ProSiteProfiles Ubiquitin domain profile. 33 108 IPR000626 GO:0005515
Amo12g0161 595 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Amo12g0161 595 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 594 IPR044571 -
Amo12g0161 595 SUPERFAMILY Ubiquitin-like 19 109 IPR029071 -
Amo12g0161 595 MobiDBLite consensus disorder prediction 226 241 - -
Amo12g0161 595 Pfam Phosphatidylinositol 3- and 4-kinase 290 539 IPR000403 -
Amo12g0161 595 CDD Ubl_ubiquitin_like 115 185 - -
Amo12g0161 595 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 594 - -
Amo12g0161 595 SUPERFAMILY Protein kinase-like (PK-like) 426 592 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0161 Amo-Chr12 2442743 2445788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0161 1 589 Acyl Lipid Metabolism Gene Families AT5G24240 52.764 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0161 - - gmx:100815111 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0161 12 2442743 2445788 Amo12g0161 12 2442743 2445788 ECH
Amo13g3255 13 103123330 103125475 Amo12g0161 12 2442743 2445788 ECH