Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1608 ATGATGAGACAGAAACAAGGAGAGGAAGCAATAGTGAGCAACATGAGCGAAGTAGAGAATGAAGAACAGAATAATGATCAACAAGAAAACCAGTCCATGTTCAGTGTTAAGAGCTTCCTTTGGCATGGTGGCTCTGTTTGGGATGCATGGTTCAGCTGTGCCTCTAACCAGGTGGCTCAAGTGCTGTTGACACTGCCATATTCATTCTCGCAATTGGGGATGGTATCAGGAATAGTGCTTCAGGTGTTCTACGGCATCATGGGAAGTTGGACTGCATATCTCATTAGTGTCCTTTATGTCGAATATCGCTCCAGAAAGGAAAAGGAAAACGTTAATTTCAAGAACCATGTCATTCAGTGGTTCGAAGTTCTTGATGGGTTGCTAGGCAAATATTGGAAAGCATTGGGGTTAGCCTTCAATTGTACTTTCCTCCTCTTTGGATCAGTGATACAGCTTATAGCATGTGCAAGTAACATATACTACATAAATGACAAATTGGACAAGAGGACTTGGACTTACATATTTGGAGCTTGTTGTGCTACCACTGTCTTCATTCCTTCTTTCCATAATTACCGTATTTGGTCTTTTCTTGGACTTGGAATGACCACTTACACCGCTTGGTATTTAGCTATTGCTGCTCTTGTTCATGGCCAGGTAGAAAATGTGACACATTCAGGTCCAACGAAGCTAGTACTGTACTTCACCGGAGCCACCAACATACTCTACACCTTTGGTGGACATGCAGTTACTGTAGAGATTATGCATGCGATGTGGAAGCCACAGAAGTTCAAGTACATATACTTGTTGGCTACATTGTATGTTTTCACATTAACGATTCCTTCAGCTGCTGCTGTTTATTGGGCTTTTGGTGATGAGCTTCTTAACCATTCCAATGCTTTCTCTCTTCTCCCAAAGAATGCTTTTCGTGATTCAGCTGTTATTCTCATGCTTATTCACCAGTTCATAACATTTGGATTTGCATGTACTCCATTGTACTTTGTGTGGGAGAAAGTAATTGGGATGCATGACACAAAGAGCATTTGTATGAGAGCACTAGCAAGGTTACCGGTGGTGATACCAATATGGTTCTTAGCCATAATATTCCCTTTCTTTGGTCCCATCAACTCTGCTGTTGGTGCTCTTCTTGTTAGCTTCACTGTCTACATTATCCCTTCCTTGGCTCATATGCTCACTTATAGAAAATCCTCTGCCAGACAGAATGCTGCAGAGAAGCCTCCTTTCTTCATGCCAAGCTGGACAGCAATGTATGTGATCAATGCATTTGTTGTGGTGTGGGTTTTGGTGGTTGGGTTTGGATTCGGAGGATGGGCCAGCATGACCAATTTCATCAAGCAAATTGACACGTTTGGGCTTTTCGCAAAGTGCTATCAGTGCAAGCCCCCGGTGGTCGCCGCCGCACCTCCGCCTCATTCTCATCCTCCTAGTCTTCATCATTGA 1458 0.4328 MMRQKQGEEAIVSNMSEVENEEQNNDQQENQSMFSVKSFLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIVLQVFYGIMGSWTAYLISVLYVEYRSRKEKENVNFKNHVIQWFEVLDGLLGKYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALVHGQVENVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSAAAVYWAFGDELLNHSNAFSLLPKNAFRDSAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICMRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRKSSARQNAAEKPPFFMPSWTAMYVINAFVVVWVLVVGFGFGGWASMTNFIKQIDTFGLFAKCYQCKPPVVAAAPPPHSHPPSLHH* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1608 485 PANTHER OS05G0424000 PROTEIN-RELATED 3 469 - -
Amo04g1608 485 Coils Coil 11 31 - -
Amo04g1608 485 Pfam Transmembrane amino acid transporter protein 42 435 IPR013057 -
Amo04g1608 485 PANTHER AUXIN INFLUX TRANSPORTER 3 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1608 Amo-Chr4 76472211 76479709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g1608 4 465 Organic Solute Cotransporters AT2G21050 78.788 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1608 K13946 - tcc:18597575 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2654 14 113898573 113909068 Amo04g1608 04 76472211 76479709 hybridization
Amo04g1608 04 76472211 76479709 Amo12g2089 12 97560813 97566959 PCT
Amo04g1608 04 76472211 76479709 Amo02g2482 02 78488961 78498224 PCT
Amo12g2089 12 97560813 97566959 Amo04g1608 04 76472211 76479709 PCT
Amo02g2482 02 78488961 78498224 Amo04g1608 04 76472211 76479709 PCT