Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00392 ATGGGGGCGTATAGCGCTGATGAAGATTACGATTATTTGTTCAAGGTGGTGCTGATTGGGGACTCTGGTGTGGGAAAATCGAACCTTTTGTCGAGATTCACCAAGAACGAATTCAGCAATGAATCAAAATCCACCATTGGGGTTGAGTTTGCCACAAGAAGCATTAGGGTAGATGATAAGATTGTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTATCGAGCAATTACAAGTGCATACTATCGAGGAGCCGTTGGGGCATTACTAGTGTACGATGTTACGCGCCATGTAACATTCGAGAATGTGGCGAGGTGGTTGAAGGAGCTGAGAGATCACACAGATGCAAACATTGTGGTTATGCTTGTGGGAAACAAAGCAGACCTCCGCCATCTGCGGGCGGTTTCGACCGATGACGCCACGGCCTTTGCTGAAAGAGAGAGCACATTTTTCATGGAAACATCTGCTCTGGAGGCCTTCAATGTCGAAAACGCCTTCACAGAGGTCATGAAGCAGATCTATCATGTTGTGAGCAAGAGGGCACTCGACATTGATGATGATCCAACATCTTTACCAAAAGGGCAATCAATCAATGTTGGGTCTAGAGATGATGTTTCAGCAGTCAAGAATGGTGGATGTTGCTCTTCCTGA 654 0.4664 MGAYSADEDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSNESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVARWLKELRDHTDANIVVMLVGNKADLRHLRAVSTDDATAFAERESTFFMETSALEAFNVENAFTEVMKQIYHVVSKRALDIDDDPTSLPKGQSINVGSRDDVSAVKNGGCCSS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00392 217 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Aip10g00392 217 Gene3D - 6 215 IPR027417 -
Aip10g00392 217 PANTHER DRAB11-RELATED 1 215 - -
Aip10g00392 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Aip10g00392 217 SMART ran_sub_2 19 214 - -
Aip10g00392 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Aip10g00392 217 ProSiteProfiles small GTPase Ras family profile. 3 217 IPR001806 GO:0003924|GO:0005525
Aip10g00392 217 SMART rab_sub_5 14 177 - -
Aip10g00392 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Aip10g00392 217 SMART ras_sub_4 11 177 - -
Aip10g00392 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Aip10g00392 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Aip10g00392 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Aip10g00392 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Aip10g00392 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Aip10g00392 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Aip10g00392 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Aip10g00392 217 CDD Rab11_like 11 175 - -
Aip10g00392 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00392 Aip-Chr10 3924127 3925287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00392 K07904 - gmx:100783534 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00392 10 3924127 3925287 Aip10g00392 10 3924127 3925287 ECH
Aip10g00392 10 3924127 3925287 Aip03g03842 03 121021188 121023376 ECH
Aip08g01514 08 25941761 25945820 Aip10g00392 10 3924127 3925287 ECH
Aip08g00976 08 11427317 11429385 Aip10g00392 10 3924127 3925287 ECH
Aip03g01841 03 23351510 23354328 Aip10g00392 10 3924127 3925287 ECH