LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g03842	ATGGGGGCCTACAGAGCGGATGACGATTACGATTACCTCTTCAAGGTGGTGCTGATCGGTGACTCTGGCGTCGGAAAATCGAACCTTCTCTCTCGCTTCACAAGGAATGAGTTCAGCCTTGAATCCAAGTCCACCATTGGTGTTGAGTTCGCCACCAGAAGCATTAAGGTTGATGATAAGGTTGTCAAGGCTCAGATTTGGGACACTGCTGGTCAAGAGAGGTACCGGGCAATTACAAGTGCTTATTATCGAGGAGCTGTTGGTGCTCTACTAGTTTATGATGTTACTCGCCATGTTACGTTTGAAAATGTGGCGAGATGGCTAAAGGAGCTGAGAGATCACACAGATGCCAACATTGTGGTAATGCTTGTAGGAAACAAGGCAGATCTGCGCCATCTGCGAGCAGTTTCCGTCGAAGACGCCACTGCCTTTGCTGAAAGAGAGAGCACATTTTTCATGGAAACATCTGCCCTTGAGTCGATGAACGTTGAGAATGCCTTCACAGAAGTCCTGACCCAGATCCACAGCGTCGTAAGCAAGAAGGCCCTTGAAGTTGGTAATGATCCAGCAGCATTGCCGAAAGGGCAGACTATCAATGTTGGTTCCCGGGACGACGTCTCAGCCGTGAAAAAAGGTGGATGTTGTTCTAATTGA	654	0.4847	MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIKVDDKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVARWLKELRDHTDANIVVMLVGNKADLRHLRAVSVEDATAFAERESTFFMETSALESMNVENAFTEVLTQIHSVVSKKALEVGNDPAALPKGQTINVGSRDDVSAVKKGGCCSN	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g03842	217	ProSiteProfiles	small GTPase Rab1 family profile.	9	215	-	-
	Aip03g03842	217	SMART	ras_sub_4	11	177	-	-
	Aip03g03842	217	SMART	ran_sub_2	19	214	-	-
	Aip03g03842	217	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	9	181	IPR027417	-
	Aip03g03842	217	Gene3D	-	6	215	IPR027417	-
	Aip03g03842	217	PANTHER	RAS-RELATED PROTEIN RABA1F-LIKE	1	215	-	-
	Aip03g03842	217	Pfam	Ras family	15	175	IPR001806	GO:0003924\|GO:0005525
	Aip03g03842	217	PANTHER	DRAB11-RELATED	1	215	-	-
	Aip03g03842	217	SMART	rab_sub_5	14	177	-	-
	Aip03g03842	217	PRINTS	Transforming protein P21 ras signature	14	35	-	-
	Aip03g03842	217	PRINTS	Transforming protein P21 ras signature	37	53	-	-
	Aip03g03842	217	PRINTS	Transforming protein P21 ras signature	55	77	-	-
	Aip03g03842	217	PRINTS	Transforming protein P21 ras signature	117	130	-	-
	Aip03g03842	217	PRINTS	Transforming protein P21 ras signature	152	174	-	-
	Aip03g03842	217	ProSiteProfiles	small GTPase Ras family profile.	8	217	IPR001806	GO:0003924\|GO:0005525
	Aip03g03842	217	SMART	rho_sub_3	16	180	IPR001806	GO:0003924\|GO:0005525
	Aip03g03842	217	TIGRFAM	small_GTP: small GTP-binding protein domain	12	170	IPR005225	GO:0005525
	Aip03g03842	217	CDD	Rab11_like	11	175	-	-
	Aip03g03842	217	ProSiteProfiles	small GTPase Rho family profile.	7	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g03842	Aip-Chr3	121021188	121023376	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g03842	15	167	EF-hand Containing Proteins	AT5G27540	27.273	3.82e-08	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g03842	K07904		-	gmx:100805995	404.831

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g03842	03	121021188	121023376	Aip03g03842	03	121021188	121023376	ECH
	Aip10g00392	10	3924127	3925287	Aip03g03842	03	121021188	121023376	ECH
	Aip08g01514	08	25941761	25945820	Aip03g03842	03	121021188	121023376	ECH
	Aip08g00976	08	11427317	11429385	Aip03g03842	03	121021188	121023376	ECH
	Aip03g01841	03	23351510	23354328	Aip03g03842	03	121021188	121023376	ECH