Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00976 ATGGGTAGCGCTTACAAAGCAGAGGAAGAGTACGACTACTTGTACAAGGTGGTGCTGATCGGAGACTCAGGTGTTGGGAAGTCGAACCTGTTGTCGAGGTTCACCAAGAACGAGTTCACCTTGGACTCAAAGTCCACCATTGGCGTCGAGTTCGCCACCCGAACCGTCCATGTTCACGACAAGATCGTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGATACCGGGCAATCACAAGTGCTTATTACCGAGGAGCTGTAGGTGCATTGGTTGTGTATGACATCAGCAGGCATGTGACCTTTGAGAACGTGGAGAGATGGCTGAAGGAGCTTCGCGACCACACGGACGCCAACCTCGTCGTCATGCTGGTGGGGAACAAGGCGGATCTACGGCACCTGCGTGCCGTGCCAACGGAGGAAGCCAAGGAGTTTGCTGAGAGAGAGAAGATATACTTCATGGAAACATCAGCACTTGAGTCTTTGAATGTGGACAGTGCCTTCACAGAAGTGCTAACTCAGATATACAATGTTGTGAGTAGGAAGAGCCTTGAGGCTGTGAATGACACTGCAGCATTGCCAAAGGGACAGACCATAAATCTTGGAAGCAAAGATGATGTCTCAGCTGTTAAGAAATCTGGTTGCTGCTCGGCATAG 657 0.5068 MGSAYKAEEEYDYLYKVVLIGDSGVGKSNLLSRFTKNEFTLDSKSTIGVEFATRTVHVHDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDISRHVTFENVERWLKELRDHTDANLVVMLVGNKADLRHLRAVPTEEAKEFAEREKIYFMETSALESLNVDSAFTEVLTQIYNVVSRKSLEAVNDTAALPKGQTINLGSKDDVSAVKKSGCCSA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00976 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 187 IPR027417 -
Aip08g00976 218 Pfam Ras family 16 176 IPR001806 GO:0003924|GO:0005525
Aip08g00976 218 CDD Rab11_like 12 176 - -
Aip08g00976 218 SMART ras_sub_4 12 178 - -
Aip08g00976 218 PANTHER DRAB11-RELATED 4 215 - -
Aip08g00976 218 ProSiteProfiles small GTPase Rho family profile. 8 199 - -
Aip08g00976 218 SMART rab_sub_5 15 178 - -
Aip08g00976 218 TIGRFAM small_GTP: small GTP-binding protein domain 13 171 IPR005225 GO:0005525
Aip08g00976 218 ProSiteProfiles small GTPase Rab1 family profile. 10 216 - -
Aip08g00976 218 SMART ran_sub_2 20 209 - -
Aip08g00976 218 Gene3D - 7 216 IPR027417 -
Aip08g00976 218 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 4 215 - -
Aip08g00976 218 PRINTS Transforming protein P21 ras signature 15 36 - -
Aip08g00976 218 PRINTS Transforming protein P21 ras signature 38 54 - -
Aip08g00976 218 PRINTS Transforming protein P21 ras signature 56 78 - -
Aip08g00976 218 PRINTS Transforming protein P21 ras signature 118 131 - -
Aip08g00976 218 PRINTS Transforming protein P21 ras signature 153 175 - -
Aip08g00976 218 SMART rho_sub_3 17 178 IPR001806 GO:0003924|GO:0005525
Aip08g00976 218 ProSiteProfiles small GTPase Ras family profile. 9 218 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00976 Aip-Chr8 11427317 11429385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00976 K07904 - gmx:100781889 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00976 08 11427317 11429385 Aip08g01514 08 25941761 25945820 ECH
Aip08g00976 08 11427317 11429385 Aip08g00976 08 11427317 11429385 ECH
Aip08g00976 08 11427317 11429385 Aip10g00392 10 3924127 3925287 ECH
Aip08g00976 08 11427317 11429385 Aip03g03842 03 121021188 121023376 ECH