Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01514 ATGGCGTCATACAATAGAGGGGACGATGACTATGACTACCTATTCAAGCTGGTTCTCATCGGTGACTCTGGCGTCGGAAAATCCAACCTCCTCTCCCGCTTCACCCGCAACGAGTTCAACCTCGAATCCAAGTCCACTATCGGCGTTGAATTCGCCACCAGAACCATCACCGTCGATGATAATAAGGTCCTCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGATATCGCGCAATCACAAGTGCCTACTACCGAGGAGCTGTTGGTGCCTTACTAGTTTATGATGTCACGCGACATATTACATTTGAGAATGTTGAGAGATGGTTGAAGGAGTTGAGAGATCACACGGATGCCAACATCATAGTAATGCTCGTTGGCAATAAAGCAGACCTGCGTCACCTTCGAGCCGTGTCTACCGAAGATGCAACAGCATTCGCCGAAAGGGAGAACATCTTTTTCATGGAGACTTCAGCCCTTGAGTCTATGAATGTTGACAATGCATTCACCCAAGTGTTGACACAAATATATCGTTTGATGACTCGGAAAGCGCTCGAAGCTGGGAACGATCCTGCAGGATTGCCTCAAGGGCAAACGATAAGTGTGGGAAACAAGGATGATGTTTCGGCTGTTAAGAAAGTTGGTTGCTGCTCTGAGTGA 660 0.4788 MASYNRGDDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRTITVDDNKVLKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHITFENVERWLKELRDHTDANIIVMLVGNKADLRHLRAVSTEDATAFAERENIFFMETSALESMNVDNAFTQVLTQIYRLMTRKALEAGNDPAGLPQGQTISVGNKDDVSAVKKVGCCSE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01514 219 ProSiteProfiles small GTPase Ras family profile. 3 219 IPR001806 GO:0003924|GO:0005525
Aip08g01514 219 SMART ras_sub_4 12 179 - -
Aip08g01514 219 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 217 - -
Aip08g01514 219 Gene3D - 7 217 IPR027417 -
Aip08g01514 219 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Aip08g01514 219 SMART rab_sub_5 15 179 - -
Aip08g01514 219 SMART ran_sub_2 20 218 - -
Aip08g01514 219 PANTHER DRAB11-RELATED 1 217 - -
Aip08g01514 219 CDD Rab11_like 12 177 - -
Aip08g01514 219 ProSiteProfiles small GTPase Rho family profile. 8 188 - -
Aip08g01514 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 185 IPR027417 -
Aip08g01514 219 TIGRFAM small_GTP: small GTP-binding protein domain 13 172 IPR005225 GO:0005525
Aip08g01514 219 PRINTS Transforming protein P21 ras signature 15 36 - -
Aip08g01514 219 PRINTS Transforming protein P21 ras signature 38 54 - -
Aip08g01514 219 PRINTS Transforming protein P21 ras signature 57 79 - -
Aip08g01514 219 PRINTS Transforming protein P21 ras signature 119 132 - -
Aip08g01514 219 PRINTS Transforming protein P21 ras signature 154 176 - -
Aip08g01514 219 SMART rho_sub_3 17 175 IPR001806 GO:0003924|GO:0005525
Aip08g01514 219 ProSiteProfiles small GTPase Rab1 family profile. 10 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01514 Aip-Chr8 25941761 25945820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01514 K07904 - egr:104450106 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00976 08 11427317 11429385 Aip08g01514 08 25941761 25945820 ECH
Aip03g01841 03 23351510 23354328 Aip08g01514 08 25941761 25945820 ECH
Aip08g01514 08 25941761 25945820 Aip10g00392 10 3924127 3925287 ECH
Aip08g01514 08 25941761 25945820 Aip03g03842 03 121021188 121023376 ECH
Aip08g01514 08 25941761 25945820 Aip08g01514 08 25941761 25945820 ECH