Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g03176 ATGAGAACAGGAAGTTGTTCTGTGCAACAAGGGCTAACCCCAGAAGCTGCAAGCATAGTGAAGCAGGCCGTGACGCTTGCAAAGCGTCGCGGCCATGCTCAAGTGACGCCACTTCACGTGGCGAACACTATGCTTTCAGATTCTAATGGTTTATTAAGAACAGCTTGTCTCCAGTCTCATTCGCACCCTCTTCAGTGCAAGGCGTTGGAGCTCTGCTTCAACGTTGCACTGAACAGGTTGCCGGCTTCAACCTCAAGCCCCATGTTGGGTAACCATCACCATCCCCACCACTCTCAGTGTCCTTCGATTTCGAACGCCATGGTAGCTGCTTTCAAGCGCGCACAAGCTCACCAGCGACGCGGATCCATTGAGAACCAACAACAACCGTTGTTGGCCGTGAAGATTGAGCTTGAACAACTCATAATCTCAATCTTGGATGACCCTAGTGTTAGTAGGGTTATGAAAGAAGCAGGGTTTTCTAGCACACAAGTCAAGAGCAATGTAGAACAAGCTGTTTCTTTAGAAATATGCTCTCAAAACAACAAGAATAACAACAAGTCAAAGGATCATAATAGCGACGGAGATAACAACAACAACAACAACATTAACAGCAAGGTGTTGGATCCGGTAAGAGATGAAGATGTTTCAAGTGTGATAGATAATTTGGTGAGTCAAAGAAGAAGAACAAGCGTGATTGTTGGTGAGTGTGTGAAGAGCCTTGAAGGTGTAGTTAGAAGGGTGATGGAGAAGTTTGAGAAAGGACAAGTTAGTGAATCCCTTAGAGGTATCAAGTTTCTACCTCTTTCTCTTTCTTCCTTCTCAAATCTTTCAAGATTAGAGGTTGAACAAAAGATTGAAGAGCTTAATAGGAGTCTTGTTAATAACAACAACAATGATAGCAATAATAAAGGGTGTGTTTTGTATCTTGGAGATCTCAAATGGATTTTTTATTATTATAGAGACCAAGGAATGAGTAGTAGGGTTTGTTATAGCCCTGTGGATCACATGATAATGGAGATTGCAAAGATGGTGAGTAGTAATAATAATAATAATAATGGAAGGTTTTGGTTGATGGGTATTGCAACTTTCCAAGCTTATATGAGATGCAAAAATGGACATCCATCAATGGAGACTCTTTGGGGTCTTCACCCCATTACAATCCCTGCTGGAAGCTTGAGTTTGAGCCTCATCACTGACAGTGGTCTACAAAATCAAGCAATAACAAACTCTAAAGCTGACAATAGAACTAGCTGGCTATTACTTGATCAAGAAGGAGGAGGAGGAGTGAGGGGTGATATTAATAATAATCATCATCATCATAATAATGATCTTGGAACCTTCATGGAACCTTCTTCTTCTTCAGCTAAGGTAGTTGAGAACGAAGTTCGAAGCTTGCAAAGTATAAATAGTACTTGTAACAGTGATTCTTCAACTTCTCTCCTTCCTGCATGGCTTCAACAGTACAAGAATGAGAATAAAGGACTCTCCTCTTCTAATCATCAGGATGTTCAAGTGGGAGAGGTTTCCAAAACATGGAACAATGCAACACAAAAACAACCCTACACTATTTGTGATCAAACTCTCACATTATCATCACCTTCTTCATCCAATACTTCTGGTGTTTTTTCCTATGATCACCACCAAAATCCTAACAATATCAACCATATTTGGAATTCAGAAAATCGTTGTAACCGCAATCACAGCCAGAACCACAACCAGAATAATGATGAACCCGCTTTGCGAGTTTACATTAGCAACAAAGAAATTGTAGATCATCATAGTCCATTAACTATCTCACCATTATCAAATCCAAGTTCTTCAAACCCTAATTCCACTTCTTCAAGTGGTGTCATGGAAGCAATGGAGTATGTGAACAACAAATTCAAAGAGCTCAACTTGGAGAACCTAAAAACCCTTTGCAATGCTTTGGAGAACAAAGTTCCATGGCAGAAAGAGATACTACCCGAAATCGCGAGCACCATTTTGCAATGCCGTTCCGGAACAAGGCAAAGAAGGAAAGGAAATAACAACAACAACAATGTGATGATGAAAGAAGAAACATGGTTGTTCTTCCAAGGTGTTGATCTTGAAGGCAAAGAGAAGATAGCAATGGAATTGGCTAGGGTTGTTTTTGGTTCATCAAAGGAAAACTTCATCTCAATATCAATGAGTAGTTTTTCATCATCAACAAGAGGTGATTCATCAATTGAGGACAACAATTCTTGCAGGAACAAGAGATCAAGGGAAGATCCAAGTTGTAGTTACATTGCGCGATTCGGGGATGCAGTGTGTTCTAACCCTCATAGGGTTTTTCTTGTTGAGGACATTGAACAAGCTGATTATTTCTCTCAACTTGGTTTCAAGAGAGCAATGGAGAGAGGAAAGGTTGAAGATTCAAATGGTGAAGAGGTTTCACTTTGTGATGCTATCATCATTTTGAGTTGTGAGAGTTTTAGTTCAAGATCAAGGGCTTGTTCTCCATTGACAAGACAAAAATCTTGTGAAGGTTCTTCATCAAGAGAAGACAATAATGATTATGGTGATGGTGTTGCTACTTTGGAGGAGATAAGTCCTTGTGTTTCTTTGGATTTAGATTTGAATATTTCCATTGATGATGATGAATGCAATGATGATCATGAAGATCATGGATCCGTGGATGAAATTGGACTTCTTGAATCTGTGGACAGAAAAGTTTTCTTCAAAATTCAGGATTTGTAA 2718 0.3992 MRTGSCSVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSDSNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSPMLGNHHHPHHSQCPSISNAMVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMKEAGFSSTQVKSNVEQAVSLEICSQNNKNNNKSKDHNSDGDNNNNNNINSKVLDPVRDEDVSSVIDNLVSQRRRTSVIVGECVKSLEGVVRRVMEKFEKGQVSESLRGIKFLPLSLSSFSNLSRLEVEQKIEELNRSLVNNNNNDSNNKGCVLYLGDLKWIFYYYRDQGMSSRVCYSPVDHMIMEIAKMVSSNNNNNNGRFWLMGIATFQAYMRCKNGHPSMETLWGLHPITIPAGSLSLSLITDSGLQNQAITNSKADNRTSWLLLDQEGGGGVRGDINNNHHHHNNDLGTFMEPSSSSAKVVENEVRSLQSINSTCNSDSSTSLLPAWLQQYKNENKGLSSSNHQDVQVGEVSKTWNNATQKQPYTICDQTLTLSSPSSSNTSGVFSYDHHQNPNNINHIWNSENRCNRNHSQNHNQNNDEPALRVYISNKEIVDHHSPLTISPLSNPSSSNPNSTSSSGVMEAMEYVNNKFKELNLENLKTLCNALENKVPWQKEILPEIASTILQCRSGTRQRRKGNNNNNNVMMKEETWLFFQGVDLEGKEKIAMELARVVFGSSKENFISISMSSFSSSTRGDSSIEDNNSCRNKRSREDPSCSYIARFGDAVCSNPHRVFLVEDIEQADYFSQLGFKRAMERGKVEDSNGEEVSLCDAIIILSCESFSSRSRACSPLTRQKSCEGSSSREDNNDYGDGVATLEEISPCVSLDLDLNISIDDDECNDDHEDHGSVDEIGLLESVDRKVFFKIQDL 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g03176 905 ProSiteProfiles Clp repeat (R) domain profile. 8 175 IPR004176 -
Aip02g03176 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 817 IPR027417 -
Aip02g03176 905 Coils Coil 278 298 - -
Aip02g03176 905 Gene3D - 9 173 IPR036628 -
Aip02g03176 905 MobiDBLite consensus disorder prediction 725 749 - -
Aip02g03176 905 PANTHER PROTEIN SMAX1-LIKE 3 1 904 - -
Aip02g03176 905 Pfam Clp amino terminal domain, pathogenicity island component 23 53 IPR004176 -
Aip02g03176 905 Pfam Clp amino terminal domain, pathogenicity island component 135 172 IPR004176 -
Aip02g03176 905 MobiDBLite consensus disorder prediction 594 616 - -
Aip02g03176 905 SUPERFAMILY Double Clp-N motif 12 168 IPR036628 -
Aip02g03176 905 Coils Coil 626 646 - -
Aip02g03176 905 Gene3D - 613 850 IPR027417 -
Aip02g03176 905 MobiDBLite consensus disorder prediction 180 207 - -
Aip02g03176 905 MobiDBLite consensus disorder prediction 596 616 - -
Aip02g03176 905 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g03176 Aip-Chr2 108521255 108525270 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g03176 - - adu:107476159 1515.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g03176 02 108521255 108525270 Aip07g01491 07 26199859 26204528 ECH
Aip02g03176 02 108521255 108525270 Aip10g01578 10 30662692 30666911 ECH
Aip02g03176 02 108521255 108525270 Aip02g03176 02 108521255 108525270 ECH
Aip02g03176 02 108521255 108525270 Aip01g00397 01 4828111 4835176 ECH