Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00397 ATGCCGACGCCGGTAAGCGCAGCAAGGCAATGCCTAACTGAAGAGGCGGCGCGTGCGCTTGACGCCGCGGTGACGGTGGCGCGTCGCCGAAACCACGCCCAGACTACCTCCCTCCACGCCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCGCACCCTGGAGCTCTCCGTCGGCATCTCCCTCGACCGCCTCCCCACCACCAGCAGCTCGAAGTCCTCCACCTCCTCCTCCTCCTCCGCCGGTGACGGACCTCCGGTATCGAACTCCCTCATGGCCGCCATCAAAAGGTCTCAGGCGAACCAGCGCCGAAACCCCGAAAACTTCCACTTCATGATCCTCCAACAACAACAAAACCAAAACAACAACCAAATCATTCCTCAAACCACGTCCACTTTGAAGGTGGAAATGAAACAATTCATGCTTTCGATCCTGGACGACCCAATCGTTAGCAGAGTCTTTGGTGAAGCTGGTTTTTCAAGCTACGATATCAAGCTCGCGTTATTGCAGCCTCCAATCGTCCAACAGCCAAACAGCAACAGTTTCTTGTACTCCCGGTTGAACCGACCGGTTTTTCTGTACAACATCGATCCCGGTAGACCTATTGGGCCGGGGTTGGGCCTTCCCTTGATGGGCTCAGACCAGAACTGCAGGAGGATCTTGGATGTTCTTGTGAAGAAGGAGAGAAGGAACCCGCTTTTGATGGGTGGGAACGCAAAGGGTGCTCTAAAGGGGTTCATGGATTTTGTTGAGAAGGGTAAAATGGGGATTTTGCCTAACGAGCTTAGTGGGTTGAGTGCGGTGTGTGTTGATAAAGAGATATGTGAGTACGTCATGGGGAATAAGAGTGAGGAAACGATGTTGTTTAGGTTGAAGGAAGTGGGGAGTATGGTGGCCAGGTGTTTAGGTGCTGGTGTGGTTGTTAGCTTTGGAGAAGTTGAGGTTCTTGTGAAGGACGAAGTGGTAAATTCCGTTGGGTTTGTTGTGGAACAGTTGAGCAGTTTGTTGGGGAATCATGGAGGGAAGGTTTGGTTGGTTGGTGTGGCGGGAAATTGTGAAGCGTATTCCAAGTTTCTGGGTTTGTTCCCAAATGTTGATAGGGATTGGGATCTTCATGTACTCACACTTACTTCTTCCTCTTCTTCTTCTGCCACCTCTTCTTCCAGCTTCATGGGGTCCTTTGTTCCACTTGGTGGTTTCTTCTCAACACCTTCCGAATTCAGAAGCAGTAGTAGCACCCTAATAAACCGTAACAACAATAATTCCCCATCTTCATCTTCATCATCGTCATCATCATCACCATCGTCATCTTTATTACTAAGCCGTTGTGACACATGCAATGAAAAGTATGAACAAGAAATGGTTGAGTTACTCAACAAGGTAGGTCATGGTGATAGTGGTGGTTACCCAACAAGCTTGCCCTGGTTACAAAGGGATCAAAATAAAGAAGCAATGGATTTGGCAAAGATCAATGAAGACAACACAAACTTGAATGGCAAGATCTTTGGATTGCAAAGGAAATGGAATGAAATTTGTCAACATGTTCATCACAAACATGAAACCTCTCCAACAAAAAGGTTCCCATTTGGTTCATCAGGTTTTAACCAAAGTACTATAAAAGTTCCATTATCCCTCAATGAGATCCAATATTCCAATCAAATTCCACAAATTTTAAATAAACAGAAGTTACCATTTTCTTCATCATCCCCGATTGGTTCTGTTGGTGTCAACAATGAAATAATTGAACAAGTTCCTCAGGTTTCTTGGCTTTCACCTTCTACCAAGGCTACAGTGAATAATGTTACCACAGATTTGGGGTTAGGAACTATGTATAATACATCAAATGCTCAAGAACCAAATACTCCAAAGGTACATGATCATAAGGGGAATCTTCGGCACTTGTCAGATTCTGTTTCAGCCGATCTTGAAGCCATGAATGAGGGTAGTACACATCAAATTGCTATATCTAAACGCTGCTCTGCTCCAACTTTCGAAGGGAAATTCAATTCGATCGATTTCAAGTCACTCCACAAGGTTCTCATTGAAAAGGTTGGATGGCAAGAAGAGGCCATATATGCTATCAATCGAGCTATTTCGCTTTGTAGCCCCGGTAAGCGTCACAGCTCATATATTAGAGCAGATACATGGCTTGCGTTTTTCGGGCCAGATCGAGTTGGAAAAAGGAAAATTGCTTTGGCAATTGCAGAGTGCTTGTTTGGTAACAGAGACAGCCTAATCTCTGTGGATTTGAGCTCGTTGGAAGGCTTGTATCCGTCCAACTCAGTTTTCGAATTCCAGAGTCCTTATTGCCATGATTCGCTTAAGAGGAAGACAGTTGTGGATTACATTGCTGGGGAGTTGGGTAAAAAGCCGAATTTGGTTATCTTTCTTGAGAATGTAGACAAAGCAGATTTGCTGGTGCAGAGTAGTTTGCTCAAAGCAATGAGAACAGGTAGGTTTCCATACTCACTTGGAAGGGAAATAAGCATCAACAATTCAGTGTTTATTGTATCCTCCGCCGTCTATAACCACGGCTCTGTCGCGTACGAGGAAGGGGCAAAAATGTTTCCAGAGGAAAGAATTCTCCAGGCCGAAAGATGTCAAATGAAATTGTTAGTTGGAAATGCTTTCGAGAATGTCGAAAAAATCGGCACGAAAAGTGTCAAGGTTGAACTGAGAAAAAAAGAGACATCAAAACCTTCAACATTTCTGAATAAAAGAAAATTAGTTCAAAGCAAAGTAACATCCAAGTCACAGAAATTATTCAAGGAAGCATCATGGTCTTGTTTTGATCTGAATATGCCTTTAGAGGAATCTGAAGAATGCACCAGTTCCAATGACTGTGAAGGCGAATCTGAAGTTGAAAACCATGAATCATGGTTACATGAATTCTGTGATCAGATCGATGTAAAAGTGGTCTTTAAGCCCTTTGATTTTGAGTCGCTTGTGGAGCAAGTAATCAAAATCATTGACATGAATTTCCAAAGGGTATTTGGATGTGAGCTTGTTCTTGAAATTGATTATGATGCCATGTCACAGATTCTTGCAGCTACTTGGTTATCAGAAAAGAAAAATGCAATGGAAAATTGGATTGAGCGTGTTCTTGGAAGAGGATTTGTTGAAGCAAAAAAGAAGTACCAAATTGAAGATAAGCTTGTGATCAAATTGGTTAAGTGTGAAAGCAATTTTGTTGAAGAACAAGATCTTGGATTGTTTCTTCCCGCTAGAATATTATTAAGTTAA 3270 0.4281 MPTPVSAARQCLTEEAARALDAAVTVARRRNHAQTTSLHAIXXXXXXXXXXXXXXXXXXFRTLELSVGISLDRLPTTSSSKSSTSSSSSAGDGPPVSNSLMAAIKRSQANQRRNPENFHFMILQQQQNQNNNQIIPQTTSTLKVEMKQFMLSILDDPIVSRVFGEAGFSSYDIKLALLQPPIVQQPNSNSFLYSRLNRPVFLYNIDPGRPIGPGLGLPLMGSDQNCRRILDVLVKKERRNPLLMGGNAKGALKGFMDFVEKGKMGILPNELSGLSAVCVDKEICEYVMGNKSEETMLFRLKEVGSMVARCLGAGVVVSFGEVEVLVKDEVVNSVGFVVEQLSSLLGNHGGKVWLVGVAGNCEAYSKFLGLFPNVDRDWDLHVLTLTSSSSSSATSSSSFMGSFVPLGGFFSTPSEFRSSSSTLINRNNNNSPSSSSSSSSSSPSSSLLLSRCDTCNEKYEQEMVELLNKVGHGDSGGYPTSLPWLQRDQNKEAMDLAKINEDNTNLNGKIFGLQRKWNEICQHVHHKHETSPTKRFPFGSSGFNQSTIKVPLSLNEIQYSNQIPQILNKQKLPFSSSSPIGSVGVNNEIIEQVPQVSWLSPSTKATVNNVTTDLGLGTMYNTSNAQEPNTPKVHDHKGNLRHLSDSVSADLEAMNEGSTHQIAISKRCSAPTFEGKFNSIDFKSLHKVLIEKVGWQEEAIYAINRAISLCSPGKRHSSYIRADTWLAFFGPDRVGKRKIALAIAECLFGNRDSLISVDLSSLEGLYPSNSVFEFQSPYCHDSLKRKTVVDYIAGELGKKPNLVIFLENVDKADLLVQSSLLKAMRTGRFPYSLGREISINNSVFIVSSAVYNHGSVAYEEGAKMFPEERILQAERCQMKLLVGNAFENVEKIGTKSVKVELRKKETSKPSTFLNKRKLVQSKVTSKSQKLFKEASWSCFDLNMPLEESEECTSSNDCEGESEVENHESWLHEFCDQIDVKVVFKPFDFESLVEQVIKIIDMNFQRVFGCELVLEIDYDAMSQILAATWLSEKKNAMENWIERVLGRGFVEAKKKYQIEDKLVIKLVKCESNFVEEQDLGLFLPARILLS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00397 1089 CDD AAA 696 839 - -
Aip01g00397 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 678 1071 IPR027417 -
Aip01g00397 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1088 - -
Aip01g00397 1089 Gene3D - 666 985 IPR027417 -
Aip01g00397 1089 MobiDBLite consensus disorder prediction 421 442 - -
Aip01g00397 1089 MobiDBLite consensus disorder prediction 618 639 - -
Aip01g00397 1089 MobiDBLite consensus disorder prediction 74 108 - -
Aip01g00397 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 189 IPR004176 -
Aip01g00397 1089 Pfam AAA domain (Cdc48 subfamily) 727 857 IPR003959 GO:0005524|GO:0016887
Aip01g00397 1089 Gene3D - 10 180 IPR036628 -
Aip01g00397 1089 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00397 Aip-Chr1 4828111 4835176 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00397 - - ahf:112720005 1942.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00397 01 4828111 4835176 Aip01g00397 01 4828111 4835176 ECH
Aip01g00397 01 4828111 4835176 Aip07g01491 07 26199859 26204528 ECH
Aip01g00397 01 4828111 4835176 Aip10g01578 10 30662692 30666911 ECH
Aip07g01491 07 26199859 26204528 Aip01g00397 01 4828111 4835176 ECH
Aip02g03176 02 108521255 108525270 Aip01g00397 01 4828111 4835176 ECH
Aip01g00397 01 4828111 4835176 Aip07g01491 07 26199859 26204528 PCT