Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g2042 ATGCTTGTTCAGGTGATTGGTGTGATATCCGTGGTTGTGATACTGGGATCAGTAGCAGAATGCAGAAGATTTAACGGCATTGAATATCCTGCAATCAACTGCAGAAAGCACAGTGCGGTATTGACTGATTTTGGTGGCGTTGGTGATGGAAAAACTTCCAACACAAAGGCATTTCAATATGCAATAAGCAACCTGAGCCACTATGCATCTGATGGTGGTGCACAGCTTGTTGTGCCACCTGGCAAATGGCTCACTGGAAGCTTTAATCTCACAAGCTATTTCACTCTCTTTCTCCAAAAGGGTGCTCTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTCCACTTCCTGTTCTACCGTCTTATGGAAGGGGAAGAGATGCTCCTGATGGAAGATTTAGCAGCCTCATCTTTGGAACTAACCTCACTGATGTTGTGATCACCGGTGCTAATGGCACAATTGACGGGCAAGGATCATATTGGTGGGCCAAGTTCAAACAGAACCAAACCAAACTGACTAGACCATACTTGATAGAGATCATGTACTCTGATCAAATCCAGATTTCAAATCTCACTCTGCTCAATTCTCCATCCTGGTTTGTTCATCCGATATACAGCAGTAATATAATAATTCAAGGGCTTACGATTGTTGCACCAGTTGACTCTCCCAACACAGATGGAATAAACCCAGATTCATGCAGAAACACTAGGATTGAAGACTGCTACATTGTATCGGGAGATGACTGCATTGCAGTGAAGAGTGGGTGGGATGAATACGGAATCAAATTCGGGAAGCCAACGGAACACGTGATCATCAGGAGACTGACATGCATATCCCCCGACAGCGCCATGATTGCATTAGGCAGTGAAATGTCCGGTGGCATCCGAGATGTGAGGGCTGAAGACATCACGGCCATCAACACGCAATCGGCGGTTAGAATCAAGACAGCAATTGGCAGAGGAGGGTATGTTAAGGACATATTTGTCAAGGGAGCTCAATTGCACACCATGAAGTATGTCTTCTGGATCACCGGTTCATATGGCTCGCATCCTGATAATGGTTTTGATCCAAACGCGCTTCCTCAAATCACTGGGATAAACTACAGAGACTTCACTGCTGACAATGTCACATACTCAGCAAGACTCGAAGGCATCTCCAAGGACCCCTTTAGTGGAATATGCATTTCAAATGTCGATATTCGACTCAGTCAAGAGAAGAACAAGCTTCAATGGAATTGCACGGATGTCTCTGGAGTTACAAAAAATGTCACTCCTCAGCCTTGTGATTTGCTTCCTCTCAAGACAGAAGCCCATGACTGTCCTTATCCAACTGACAAACTCCCCATTGATAGACTTCAACTCCAGACTTGTTCACTTTAA 1380 0.4486 MLVQVIGVISVVVILGSVAECRRFNGIEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGAQLVVPPGKWLTGSFNLTSYFTLFLQKGALILASQDESEWPPLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGANGTIDGQGSYWWAKFKQNQTKLTRPYLIEIMYSDQIQISNLTLLNSPSWFVHPIYSSNIIIQGLTIVAPVDSPNTDGINPDSCRNTRIEDCYIVSGDDCIAVKSGWDEYGIKFGKPTEHVIIRRLTCISPDSAMIALGSEMSGGIRDVRAEDITAINTQSAVRIKTAIGRGGYVKDIFVKGAQLHTMKYVFWITGSYGSHPDNGFDPNALPQITGINYRDFTADNVTYSARLEGISKDPFSGICISNVDIRLSQEKNKLQWNCTDVSGVTKNVTPQPCDLLPLKTEAHDCPYPTDKLPIDRLQLQTCSL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g2042 459 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 13 458 - -
Ahy9g2042 459 SMART pbh1 363 397 IPR006626 -
Ahy9g2042 459 SMART pbh1 295 316 IPR006626 -
Ahy9g2042 459 SMART pbh1 233 254 IPR006626 -
Ahy9g2042 459 SMART pbh1 206 232 IPR006626 -
Ahy9g2042 459 SUPERFAMILY Pectin lyase-like 34 454 IPR011050 -
Ahy9g2042 459 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Ahy9g2042 459 PANTHER PECTIN LYASE-RELATED 13 458 - -
Ahy9g2042 459 Gene3D - 24 426 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g2042 Ahy-Chr9 108777911 108779667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g2042 27 459 Glycoside Hydrolase AT3G48950 70.023 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g2042 - - adu:107466830 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g3581 19 158437987 158448694 Ahy9g2042 9 108777911 108779667 hybridization
Ahy15g3586 15 158632810 158635861 Ahy9g2042 9 108777911 108779667 PCT
Ahy5g3172 5 113621664 113624586 Ahy9g2042 9 108777911 108779667 PCT
Ahy9g2042 9 108777911 108779667 Ahy15g3586 15 158632810 158635861 PCT
Ahy9g2042 9 108777911 108779667 Ahy5g3172 5 113621664 113624586 PCT