Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy5g3172 ATGGCAATCATCAACATGTATGCAAAATGCACAAACTCCTATGTTGTTGGGTTTGTCTGCACAATTTTGTTGTTGAGATCAGTAGCAGAATGCAGAGAGGTCAATGGTGTATTGGAGAATCTTGAGTACCCTGCAATTAGTTGCAGAAAACACAGTGCAAGTTTGATTGATTTTGGTGGAGTTGGTGATGGCAAAACATCCAATACAAAGGCCTTTCAATATGCAATTGGGAACCTGAGCCATTATGGTTCTGATGGTGGAGCATTGCTTGTTGTGCCACCTGGGAAATGGTTAACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTTCTCCACCGTGACACTATCATCGTCGCGTCTCAGGATGAATCAGAATGGCCTGAACTTTCTGTGCTACCATCATATGGTAGAGGAAGAGATGCTCCTGATGGAAGATTTAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTAGTTACTGGTTATAATGGGACAATTGATGGACAAGGCTCTTATTGGTGGGATAAGTTTCATAAGGGTGAATTGAAATTTACTAGACCATATATGATTGAGATTATGTTCTCTGATCACATTCAGATATCAAATCTCACTTTGATCAACTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATAATTCAAGGACTCACCATTGCTGCACCAACTGACTCTCCCAACACAGATGGAATAGACCCTGATTCTTGTACCAATACAAGGATTGAAGACTGCAATATTGTCTCTGGTGATGATTGTATTGCAGTTAAGAGTGGTTGGGATGAGTATGGAATAAAATTTGGAATGCCAAGCCAACACATAGTAATTAGAAGGCTTACATGTGTATCCCCTGATAGTGCTATGATTGCATTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCCGAAAACCTCACTGCTATCGATACTGAATCGGCCGTTAGGATCAAAACTGCAGTTGGTAGAGGAGGATATGTTAAGGACATATTTGTTAAGGGAATGAACTTGAACAACATGAAATATGTGTTTTGGATAACAGGTTCTTATGGATCACACGCTGACAATGATTTTGATCCAAAAGCACTTCCTGATATTAGTGGCATAAACTATAGAGATGTCATAGCAGATTACTGCAATTATACAGCAAAACTTGAAGGGATTCCTAATGATCCTTTTACAGGAATCTGTATATCTAATGTGAGTACCACAAATAGTGACATGAAGAAATTGCAATGGAATTGCACTGATGTTGAAGGTGTTTCAAGCAATGTTAGTCCTGTCCCTTGTGAATTGCTATCACAGAAGGAAGAGAAGAAATTTGATTGTCCTTTTCCAGATGAAAAACTTCCCATTGAAAGTGTTATGTTGAAGACTTGTTCCTTTAAAAGTGTCTAA 1431 0.392 MAIINMYAKCTNSYVVGFVCTILLLRSVAECREVNGVLENLEYPAISCRKHSASLIDFGGVGDGKTSNTKAFQYAIGNLSHYGSDGGALLVVPPGKWLTGSFNLTSHFTLFLHRDTIIVASQDESEWPELSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVVTGYNGTIDGQGSYWWDKFHKGELKFTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYSSDIIIQGLTIAAPTDSPNTDGIDPDSCTNTRIEDCNIVSGDDCIAVKSGWDEYGIKFGMPSQHIVIRRLTCVSPDSAMIALGSEMSGGIQDVRAENLTAIDTESAVRIKTAVGRGGYVKDIFVKGMNLNNMKYVFWITGSYGSHADNDFDPKALPDISGINYRDVIADYCNYTAKLEGIPNDPFTGICISNVSTTNSDMKKLQWNCTDVEGVSSNVSPVPCELLSQKEEKKFDCPFPDEKLPIESVMLKTCSFKSV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy5g3172 476 SUPERFAMILY Pectin lyase-like 45 446 IPR011050 -
Ahy5g3172 476 PANTHER PECTIN LYASE-RELATED 19 472 - -
Ahy5g3172 476 Pfam Glycosyl hydrolases family 28 150 430 IPR000743 GO:0004650|GO:0005975
Ahy5g3172 476 Gene3D - 33 438 IPR012334 -
Ahy5g3172 476 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 19 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy5g3172 Ahy-Chr5 113621664 113624586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy5g3172 19 474 Glycoside Hydrolase AT3G61490 65.302 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy5g3172 - - gmx:100785005 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3586 15 158632810 158635861 Ahy5g3172 5 113621664 113624586 hybridization
Ahy5g3172 5 113621664 113624586 Ahy19g3581 19 158437987 158448694 PCT
Ahy5g3172 5 113621664 113624586 Ahy9g2042 9 108777911 108779667 PCT
Ahy19g3581 19 158437987 158448694 Ahy5g3172 5 113621664 113624586 PCT
Ahy9g2042 9 108777911 108779667 Ahy5g3172 5 113621664 113624586 PCT