Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy9g1555 ATGTCTCGAATACTCTTCACTACATGGAACAAGCACAGAAACAAGCTTCATCCCAACCCAAAAATCCTTTCTTCTTCTCCTTCTTCTTCTTCACATGCCTACTTCGCCCTTTCGCCCCATCATCATCAGCAGCAGCAGCAGCGTCACCGCGTCCTCACCAACACCAGCACTTTCTTGTTCTACCATAGGCTACTCCAGCACCGCCAAAAATGGGGCCGTGGAGGCTCGGACGACCCGATTACCCGGTCCAGGAGGATCCGAGCCGATCCGAATTGCCCACGCTGCTCCAGGGACATGATTGTAATTGACAACCTCAAGCTCCCAACTCGCCAGGGAGGTCACCAATTCAATGGTACTGTGAACCTTTGCCCCAACTGTAACGCTGCCTATTACTTCAGCCCTTATGGCGTTGCGCCTCTTCAAGGTAGCTTTTTGGAGATTGGGGCTCAGAGGGTCTCTGAAAAAAACGATCTTGATGATGATGATGATGTTGATTTTGATTTTACTAAGGTGCCTAGGAGAATCAATGGGTTTGGTGGTAGAGTGTTGAATAGTAATGGTGGTGGTGGTGGTGATGGGGATAGTAATGCACCTGGTTCAGGTGATGGGAATGGTGGTGGTGGTGGTGTTGCTGTGCATAGTCCTCCAGGGCCACCTTTTGCTCCTCGTGTTAATGTTATAAGGGCTTCTGGGCCCCGAGAAGGTGGTTCCGGTGGCAGCAGTGGAAGTGAGAAGAGTTCATGGGGTGGTTCCAATTTGGGGAGGGACTTGCCAACTCCAAAGGAGATTTGTAAGGGTCTTGACAAGTTTGTAATTGGTCAGGACAGGGCCAAAAAGGTTCTATCAGTAGCTGTTTATAACCACTACAAAAGAATATACCATGCTTCTCAACAGAAAGGGTCAGAGGCTGATTCTGGAATTCCAGAAGGATTAGATAATGATGATGTCGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCCGGGAAGACATTACTTGCTAAGACGCTAGCTCGGTTCGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACTCAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAATTACTGGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATAGTCTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATTAGCCGAGATGTTTCAGGCGAGGGTGTTCAGCAGGCACTATTAAAAATGCTGGAAGGAACTGTAGTAAATGTTCCTGAGAAAGGAGCAAGGAAACATCCACGAGGTGATAATATACAGATCGACACAAAGAATATTCTTTTTATATGTGGAGGTGCCTTCATTGATCTTGAAAAAACAATTTCAGAGAGACGACATGATTCTTCCATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGGACTGGTCAACTAACAAATGCAGCCATAGCATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCGATTTTAATTAGCTTGTCAGCTTTAACTGAAGAACAGCTTATGCAGGTTCTCTCAGAACCGAAAAATGCACTTTCTAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAACTACACTTCACAGAGAAAGCTATGAGATTGATCGCCAAGAAAGCAATGGCAAAAAATACTGGCGCCAGGGGTTTAAGAGCCCTACTGGAAAACATTTTAACTGAAGCCATGTATGAGATTCCAGATGTCAAGACAGGAAACGAACAGATTGATGCAGTTGTTGTCGATGAGGAATCAGTAGGATCAGTTAACGCCGTTGGTTGCGGAGGAAAAATTCTCCGCGGCGAAGGTGCTTTGGAGCGGTACCTTGCTAAGATGGAGGACTCAAAGGTTAAGGGTGATGTAGCTGAATCTGACTTGCAAGATGGGGAACAAGAGATCACATCAAGAGCAATGAGCATGTAA 2025 0.4519 MSRILFTTWNKHRNKLHPNPKILSSSPSSSSHAYFALSPHHHQQQQQRHRVLTNTSTFLFYHRLLQHRQKWGRGGSDDPITRSRRIRADPNCPRCSRDMIVIDNLKLPTRQGGHQFNGTVNLCPNCNAAYYFSPYGVAPLQGSFLEIGAQRVSEKNDLDDDDDVDFDFTKVPRRINGFGGRVLNSNGGGGGDGDSNAPGSGDGNGGGGGVAVHSPPGPPFAPRVNVIRASGPREGGSGGSSGSEKSSWGGSNLGRDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASQQKGSEADSGIPEGLDNDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRHDSSIGFGAPVRANMRTGQLTNAAIASSLLESVESADLIAYGLIPEFIGRFPILISLSALTEEQLMQVLSEPKNALSKQYKKLFSMNNVKLHFTEKAMRLIAKKAMAKNTGARGLRALLENILTEAMYEIPDVKTGNEQIDAVVVDEESVGSVNAVGCGGKILRGEGALERYLAKMEDSKVKGDVAESDLQDGEQEITSRAMSM* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy9g1555 674 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 74 669 - -
Ahy9g1555 674 SMART AAA_5 319 481 IPR003593 -
Ahy9g1555 674 MobiDBLite consensus disorder prediction 654 674 - -
Ahy9g1555 674 Pfam C-terminal, D2-small domain, of ClpB protein 530 600 IPR019489 -
Ahy9g1555 674 Gene3D - 529 628 - -
Ahy9g1555 674 Pfam AAA domain (Cdc48 subfamily) 319 523 IPR003959 GO:0005524|GO:0016887
Ahy9g1555 674 MobiDBLite consensus disorder prediction 177 258 - -
Ahy9g1555 674 MobiDBLite consensus disorder prediction 236 253 - -
Ahy9g1555 674 Gene3D - 252 528 IPR027417 -
Ahy9g1555 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 616 IPR027417 -
Ahy9g1555 674 CDD AAA 320 478 - -
Ahy9g1555 674 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 254 620 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Ahy9g1555 674 SMART ClpB_D2_small_2 530 623 IPR019489 -
Ahy9g1555 674 PANTHER OS01G0886600 PROTEIN 74 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy9g1555 Ahy-Chr9 83927255 83932821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy9g1555 323 422 Miscellaneous Gene Families AT3G02450 36.634 4.81e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy9g1555 K03544 - qsu:112016309 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1916 19 110713218 110719626 Ahy9g1555 9 83927255 83932821 hybridization
Ahy15g3383 15 156325412 156331018 Ahy9g1555 9 83927255 83932821 PCT
Ahy5g1904 5 87275077 87280593 Ahy9g1555 9 83927255 83932821 PCT
Ahy9g1555 9 83927255 83932821 Ahy15g3383 15 156325412 156331018 PCT
Ahy9g1555 9 83927255 83932821 Ahy5g1904 5 87275077 87280593 PCT