Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g1916 ATGTCTCGAATACTCTTCACTACATGGAACAAGCACAGAAACAAGCTTCATCCCAACCCAAAAATCCTTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCACATGCCTACTTCACCCTTTCACCCCATCATCATCATCATCAGCAGCAGCAGCGTCACCGCGTCCTCGCCAACACCAGCACTTTCTTGTTCTACCATAGGCTACTCCAGCACCGCCACAAATGGGGCCGTGGAGGCTCGGACGACCCGATTACTCGGTCCCGGAGGATCCGAGCCGATCCGAATTGCCCACGCTGCTCCAGGGACATGATTGTAATTGACAACCTCAAGCTCCCAACTCGCCAGGGAGGTCACCAATTCAATGGTACTGTGAACCTTTGCCCCAATTGCAACGCTGCCTATTACTTCAGCCCTCATGGCGTTGCGCCTCTTCAAGGTAGCTTTTTGGAGATTGGGGCTCAGAGGGTTTCTGAAAAAAACGATCTTGATGATGATGATGATGATGTTGATTTTGATTCTACTAAGGTGCCTAGGAGAATCAGTGGGTTTGGTGGTAGAGTGTTGAATAGTAATGGTGGTGGTGGTGGTGATGGGGATAGTAATGCACCTGGTTCAGGTGATGGGAATGGTGGTGGTGGTGGTGTTGCTGTGCATAGTCCTCCAGGGCCACCTTTTGCTCCTGGTGTTAATGTTATAAGGGCTTCTGGGCCCCGAGAAGGTGGTTCCGGTGGCGGCAGTGGCAGTGAGAAGAGTTCATGGGGTGGTTCCAATTTGGGGAGGGACTTGCCAACTCCAAAGGAGATCTGTAAGGGTCTTGACAAGTTTGTAATTGGCCAGGACAGGGCCAAAAAGGTTCTATCAGTAGCTGTTTATAACCACTACAAAAGAATATACCATGCTTCTCAACAGAAAGGGTCAGAGGCTGATTCTGGAATTCCAGAAGGATTAGATAATGATGATGTCGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAGACGCTAGCTCGGTTCGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACTCAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAATTACTGGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATAGTCTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATTAGCCGAGATGTTTCAGGCGAGGGTGTTCAGCAGGCACTATTAAAAATGCTGGAAGGAACTGTAGTAAATGTTCCTGAGAAAGGAGCAAGGAAACATCCACGAGGTGATAATATACAGATCGACACAAAGAATATTCTTTTTATATGTGGGGGTGCCTTCATTGATCTTGAAAAAACAATTTCAGAGAGACGACATGATTCTTCCATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGGACTGGTCAACTAACAAATGCAGCCATAGCATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCGATTTTAATTAGCTTGTCAGCTTTAACTGAAGAACAGCTTATGCAGGTCCTCTCAGAACCGAAAAATGCACTCTCTAAGCAGTACAAGAAATTATTTAGCATGAATAATGTAAAACTACACTTCACAGAGAAAGCTATGAGATTGATCGCCAAGAAAGCAATGGCAAAAAATACTGGCGCCAGGGGTTTAAGAGCCCTACTGGAAAACATTTTAACTGAAGCCATGTATGAGATTCCAGATGTCAAGACAGGAAACGAACAGATTGATGCAGTTGTTGTCGATGAGGAATCAGTAGGATCGGTAAATGCCGTCGGTTGCGGAGGAAAAATTCTCCGCGGCGAAGGTGCTTTGGAGCGGTACCTTGCTAAGATGGAGGACTCAAAGGTTAAGGGTGATGTAGCTGAATCTGACATGCAAGATGGGGAACAAGAGATCACATCAAGAGCAATGAGCATGTAA 2037 0.4546 MSRILFTTWNKHRNKLHPNPKILSSSSSSSSSSHAYFTLSPHHHHHQQQQRHRVLANTSTFLFYHRLLQHRHKWGRGGSDDPITRSRRIRADPNCPRCSRDMIVIDNLKLPTRQGGHQFNGTVNLCPNCNAAYYFSPHGVAPLQGSFLEIGAQRVSEKNDLDDDDDDVDFDSTKVPRRISGFGGRVLNSNGGGGGDGDSNAPGSGDGNGGGGGVAVHSPPGPPFAPGVNVIRASGPREGGSGGGSGSEKSSWGGSNLGRDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASQQKGSEADSGIPEGLDNDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRHDSSIGFGAPVRANMRTGQLTNAAIASSLLESVESADLIAYGLIPEFIGRFPILISLSALTEEQLMQVLSEPKNALSKQYKKLFSMNNVKLHFTEKAMRLIAKKAMAKNTGARGLRALLENILTEAMYEIPDVKTGNEQIDAVVVDEESVGSVNAVGCGGKILRGEGALERYLAKMEDSKVKGDVAESDMQDGEQEITSRAMSM* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g1916 678 MobiDBLite consensus disorder prediction 157 262 - -
Ahy19g1916 678 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 259 624 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Ahy19g1916 678 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 77 674 - -
Ahy19g1916 678 Pfam AAA domain (Cdc48 subfamily) 323 527 IPR003959 GO:0005524|GO:0016887
Ahy19g1916 678 Gene3D - 256 532 IPR027417 -
Ahy19g1916 678 CDD AAA 324 482 - -
Ahy19g1916 678 SMART ClpB_D2_small_2 534 627 IPR019489 -
Ahy19g1916 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 620 IPR027417 -
Ahy19g1916 678 MobiDBLite consensus disorder prediction 657 678 - -
Ahy19g1916 678 PANTHER OS01G0886600 PROTEIN 77 674 - -
Ahy19g1916 678 Pfam C-terminal, D2-small domain, of ClpB protein 534 604 IPR019489 -
Ahy19g1916 678 Gene3D - 533 632 - -
Ahy19g1916 678 SMART AAA_5 323 485 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g1916 Ahy-Chr19 110713218 110719626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g1916 327 426 Miscellaneous Gene Families AT3G02450 36.634 4.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g1916 K03544 - qsu:112016309 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g1916 19 110713218 110719626 Ahy19g1916 19 110713218 110719626 ECH
Ahy19g1916 19 110713218 110719626 Ahy9g1555 9 83927255 83932821 hybridization
Ahy15g3383 15 156325412 156331018 Ahy19g1916 19 110713218 110719626 PCT
Ahy5g1904 5 87275077 87280593 Ahy19g1916 19 110713218 110719626 PCT
Ahy19g1916 19 110713218 110719626 Ahy15g3383 15 156325412 156331018 PCT
Ahy19g1916 19 110713218 110719626 Ahy5g1904 5 87275077 87280593 PCT